RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 ZNF791Q3KP31 576 aaPredicted RBP2.34□□□□□ -2.03
CCDC39-207ENST00000495817 LINC01554Q52M75 96 aa2.34□□□□□ -2.03
CCDC39-207ENST00000495817 RPL22L1Q6P5R6 122 aaKnown RBP2.34□□□□□ -2.03
CCDC39-207ENST00000495817 RPS19BP1Q86WX3 136 aaKnown RBP2.34□□□□□ -2.03
CCDC39-207ENST00000495817 C5orf17Q8NAS9 161 aa2.34□□□□□ -2.03
CCDC39-207ENST00000495817 DEFB124Q8NES8 71 aa2.34□□□□□ -2.03
CCDC39-207ENST00000495817 TIMM21Q9BVV7 248 aa2.34□□□□□ -2.03
CCDC39-207ENST00000495817 MRPL32Q9BYC8 188 aaKnown RBP2.34□□□□□ -2.03
CCDC39-207ENST00000495817 TCEAL2Q9H3H9 227 aaPredicted RBP2.34□□□□□ -2.03
CCDC39-207ENST00000495817 SCP2D1Q9UJQ7 156 aa2.34□□□□□ -2.03
CCDC39-207ENST00000495817 PLXNA2O75051 1894 aa2.34□□□□□ -2.03
CCDC39-207ENST00000495817 POLEQ07864 2286 aa2.34□□□□□ -2.04
CCDC39-207ENST00000495817 FLNBO75369 2602 aaKnown RBP2.34□□□□□ -2.04
CCDC39-207ENST00000495817 BSNQ9UPA5 3926 aa2.34□□□□□ -2.04
CCDC39-207ENST00000495817 EML5Q05BV3 1969 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 ATMQ13315 3056 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 TRAV7A0A075B6U4 112 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 TRAV13-1A0A0B4J241 112 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 LEPROTO15243 131 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 IGKV1-16P04430 117 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 CRYGSP22914 178 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 RPL22P35268 128 aaKnown RBP2.33□□□□□ -2.04
CCDC39-207ENST00000495817 ZNF93P35789 620 aaPredicted RBP2.33□□□□□ -2.04
CCDC39-207ENST00000495817 DYNLT3P51808 116 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 KRTAP12-1P59990 96 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 TMEM258P61165 79 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 SNRPD3P62318 126 aaKnown RBP2.33□□□□□ -2.04
CCDC39-207ENST00000495817 CATR1Q13166 79 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 KRTAP13-4Q3LI77 160 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 LINC00311Q8N616 119 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 NAT14Q8WUY8 206 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 CIB3Q96Q77 187 aaPredicted RBP2.33□□□□□ -2.04
CCDC39-207ENST00000495817 HELZ2Q9BYK8 2649 aaKnown RBP2.33□□□□□ -2.04
CCDC39-207ENST00000495817 TSC2P49815 1807 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 KIAA1549LQ6ZVL6 1849 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 COL12A1Q99715 3063 aa2.33□□□□□ -2.04
CCDC39-207ENST00000495817 CHD3Q12873 2000 aaKnown RBP2.32□□□□□ -2.04
CCDC39-207ENST00000495817 MUC22E2RYF6 1773 aaPredicted RBP2.32□□□□□ -2.04
CCDC39-207ENST00000495817 A0A087X0T9 212 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 A0A0G2JMM0 328 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 A0A1W2PPB8 328 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 KIR3DP1A8MWS1 328 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 A8MWV9 139 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 S100A4P26447 101 aaKnown RBP2.32□□□□□ -2.04
CCDC39-207ENST00000495817 RPL28P46779 137 aaKnown RBP2.32□□□□□ -2.04
CCDC39-207ENST00000495817 HIST1H4AP62805 103 aaKnown RBP2.32□□□□□ -2.04
CCDC39-207ENST00000495817 HBBP68871 147 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 KISS1Q15726 138 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 PYY3Q5JQD4 70 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 C22orf39Q6P5X5 142 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 ZNF705AQ6ZN79 300 aaPredicted RBP2.32□□□□□ -2.04
CCDC39-207ENST00000495817 OR10AC1Q8NH08 325 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 PRO1933Q9H354 126 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 Q9H521 79 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 EPDR1Q9UM22 224 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 V9GYS6 101 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 PCDH15Q96QU1 1955 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 HECTD1Q9ULT8 2610 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 NBPF19A0A087WUL8 3843 aa2.32□□□□□ -2.04
CCDC39-207ENST00000495817 TNRC6BQ9UPQ9 1833 aaKnown RBP2.31□□□□□ -2.04
CCDC39-207ENST00000495817 PDCD11Q14690 1871 aaKnown RBP2.31□□□□□ -2.04
CCDC39-207ENST00000495817 CCDC88CQ9P219 2028 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 IGHV1-18A0A0C4DH31 117 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 ZNF705FA8MVS1 300 aaPredicted RBP2.31□□□□□ -2.04
CCDC39-207ENST00000495817 H3BMG7 143 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 H3BT86 120 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 H7C2G1 150 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 CDC42EP2O14613 210 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 SLC25A5P05141 298 aaKnown RBP2.31□□□□□ -2.04
CCDC39-207ENST00000495817 MSMBP08118 114 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 CD14P08571 375 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 HIST1H1DP16402 221 aaKnown RBP2.31□□□□□ -2.04
CCDC39-207ENST00000495817 HLA-DMBP28068 263 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 SRP14P37108 136 aaKnown RBP2.31□□□□□ -2.04
CCDC39-207ENST00000495817 QRFPP83859 136 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 IZUMO2Q6UXV1 221 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 PHF5AQ7RTV0 110 aaKnown RBP2.31□□□□□ -2.04
CCDC39-207ENST00000495817 AAED1Q7RTV5 226 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 C10orf126Q8N4M7 172 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 DEFB119Q8N690 84 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 PLPP5Q8NEB5 264 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 DPH3Q96FX2 82 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 SLC39A9Q9NUM3 307 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 COMMD3Q9UBI1 195 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 ZNF462Q96JM2 2506 aa2.31□□□□□ -2.04
CCDC39-207ENST00000495817 CNOT1A5YKK6 2376 aaKnown RBP2.3□□□□□ -2.04
CCDC39-207ENST00000495817 UNC79Q9P2D8 2635 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 FBN1P35555 2871 aaKnown RBP2.3□□□□□ -2.04
CCDC39-207ENST00000495817 OR2T8A6NH00 312 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 EIF5AP63241 154 aaKnown RBP2.3□□□□□ -2.04
CCDC39-207ENST00000495817 BTG2P78543 158 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 SPANXN3Q5MJ09 141 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 FOXI2Q6ZQN5 318 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 C7orf65Q6ZTY9 151 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 MORN4Q8NDC4 146 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 SNRNP25Q9BV90 132 aaKnown RBP2.3□□□□□ -2.04
CCDC39-207ENST00000495817 RPRMQ9NS64 109 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 TAS2R8Q9NYW2 309 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 CCDC167Q9P0B6 97 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 MPC1Q9Y5U8 109 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms