RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 HTN1P15515 57 aa12.41□□□□□ -0.42
CCDC88B-210ENST00000494566 SUMO2P61956 95 aaKnown RBP12.41□□□□□ -0.42
CCDC88B-210ENST00000494566 HIST2H2BDQ6DRA6 164 aa12.41□□□□□ -0.42
CCDC88B-210ENST00000494566 C2orf66Q6UXQ4 117 aa12.41□□□□□ -0.42
CCDC88B-210ENST00000494566 SRSF9Q13242 221 aaKnown RBP eCLIP12.41□□□□□ -0.42
CCDC88B-210ENST00000494566 PTH2Q96A98 100 aa12.41□□□□□ -0.42
CCDC88B-210ENST00000494566 PRADC1Q9BSG0 188 aa12.41□□□□□ -0.42
CCDC88B-210ENST00000494566 DAZ1Q9NQZ3 744 aaKnown RBP12.41□□□□□ -0.42
CCDC88B-210ENST00000494566 ZNF815PA8K554 130 aa12.4□□□□□ -0.42
CCDC88B-210ENST00000494566 OPRPNQ99935 248 aaPredicted RBP12.4□□□□□ -0.42
CCDC88B-210ENST00000494566 PGPEP1Q9NXJ5 209 aa12.4□□□□□ -0.42
CCDC88B-210ENST00000494566 TRAV12-2A0A075B6T6 113 aa12.4□□□□□ -0.42
CCDC88B-210ENST00000494566 CCDC168Q8NDH2 2452 aa12.4□□□□□ -0.43
CCDC88B-210ENST00000494566 H7C2G1 150 aa12.39□□□□□ -0.43
CCDC88B-210ENST00000494566 ZNF256Q9Y2P7 627 aaPredicted RBP12.39□□□□□ -0.43
CCDC88B-210ENST00000494566 TRAV21A0A0B4J279 112 aa12.39□□□□□ -0.43
CCDC88B-210ENST00000494566 RNF223E7ERA6 249 aa12.39□□□□□ -0.43
CCDC88B-210ENST00000494566 KRTAP10-9P60411 292 aa12.39□□□□□ -0.43
CCDC88B-210ENST00000494566 CFHR3Q02985 330 aa12.39□□□□□ -0.43
CCDC88B-210ENST00000494566 SAMD13Q5VXD3 122 aa12.39□□□□□ -0.43
CCDC88B-210ENST00000494566 MRPL16Q9NX20 251 aaKnown RBP12.39□□□□□ -0.43
CCDC88B-210ENST00000494566 APCP25054 2843 aa12.39□□□□□ -0.43
CCDC88B-210ENST00000494566 A0A1B0GWB2 263 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 F8VRH5 84 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 H7C1H1 209 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 OVOL1O14753 267 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 ZFP2Q6ZN57 461 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 ATP6V0BQ99437 205 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 SMPXQ9UHP9 88 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 TRAV12-3A0A0B4J271 114 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 LINC01549A6NIU2 74 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 ZNF688P0C7X2 276 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 BAALCQ8WXS3 180 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 H3BUA1 57 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 FOXI2Q6ZQN5 318 aa12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 SPAG8Q99932 426 aaPredicted RBP12.38□□□□□ -0.43
CCDC88B-210ENST00000494566 LGALS1P09382 135 aaKnown RBP12.37□□□□□ -0.43
CCDC88B-210ENST00000494566 ASIPP42127 132 aa12.37□□□□□ -0.43
CCDC88B-210ENST00000494566 PSMB2P49721 201 aa12.37□□□□□ -0.43
CCDC88B-210ENST00000494566 MYMXA0A1B0GTQ4 84 aa12.37□□□□□ -0.43
CCDC88B-210ENST00000494566 TM2D2Q9BX73 214 aa12.37□□□□□ -0.43
CCDC88B-210ENST00000494566 HIGD1BQ9P298 99 aa12.37□□□□□ -0.43
CCDC88B-210ENST00000494566 E9PLD3 99 aa12.36□□□□□ -0.43
CCDC88B-210ENST00000494566 PSMB8P28062 276 aa12.36□□□□□ -0.43
CCDC88B-210ENST00000494566 TMEM170BQ5T4T1 132 aa12.36□□□□□ -0.43
CCDC88B-210ENST00000494566 LINC01356Q8N9X3 169 aa12.36□□□□□ -0.43
CCDC88B-210ENST00000494566 AKAP9Q99996 3911 aa12.36□□□□□ -0.43
CCDC88B-210ENST00000494566 CHD6Q8TD26 2715 aa12.36□□□□□ -0.43
CCDC88B-210ENST00000494566 NIPBLQ6KC79 2804 aaeCLIP12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 PRM2P04554 102 aa12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 RNASE3P12724 160 aaKnown RBP12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 GAGE13Q4V321 117 aa12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 SPANXB1Q9NS25 103 aaPredicted RBP12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 BEX4Q9NWD9 120 aaPredicted RBP12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 TP53TG1Q9Y2A0 90 aa12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 PLNP26678 52 aa12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 C20orf78Q9BR46 151 aa12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 JMJD1CQ15652 2540 aa12.35□□□□□ -0.43
CCDC88B-210ENST00000494566 SYNJ2BPP57105 145 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 PSMG4Q5JS54 123 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 DCANP1Q8TF63 244 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 LENEPQ9Y5L5 61 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 IGHV4-4A0A075B6R2 117 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 IGHV3-73A0A0B4J1V6 119 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 LINC01546A6NGU7 62 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 C11orf86A6NJI1 115 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 CD7P09564 240 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 DPH3P1Q9H4G8 78 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 A0A096LNT2 108 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 HOXA3O43365 443 aaPredicted RBP12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 FAM19A4Q96LR4 140 aa12.34□□□□□ -0.43
CCDC88B-210ENST00000494566 TRBV7-3A0A075B6L6 115 aa12.33□□□□□ -0.44
CCDC88B-210ENST00000494566 GAGE12HA6NDE8 117 aa12.33□□□□□ -0.44
CCDC88B-210ENST00000494566 RRN3P1Q2M238 152 aa12.33□□□□□ -0.44
CCDC88B-210ENST00000494566 MORN3Q6PF18 240 aaPredicted RBP12.33□□□□□ -0.44
CCDC88B-210ENST00000494566 NEXN-AS1Q8NBZ9 246 aa12.33□□□□□ -0.44
CCDC88B-210ENST00000494566 PRRC2AP48634 2157 aaKnown RBP12.32□□□□□ -0.44
CCDC88B-210ENST00000494566 C18orf65Q6ZTR6 163 aa12.32□□□□□ -0.44
CCDC88B-210ENST00000494566 CR1P17927 2039 aa12.32□□□□□ -0.44
CCDC88B-210ENST00000494566 DEFB136Q30KP8 78 aa12.32□□□□□ -0.44
CCDC88B-210ENST00000494566 Q5PR19 223 aa12.32□□□□□ -0.44
CCDC88B-210ENST00000494566 ITPR3Q14573 2671 aa12.32□□□□□ -0.44
CCDC88B-210ENST00000494566 ADARB2-AS1A8MUL3 147 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 COX6B1P14854 86 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 RNASE13Q5GAN3 156 aaKnown RBP12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 TOMM6Q96B49 74 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 BRI3O95415 125 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 IGHV4OR15-8A0A075B7B6 117 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 A0A087WW49 117 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 TSPEAR-AS2P59090 65 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 ORMDL2Q53FV1 153 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 SIGMAR1Q99720 223 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 ZNF580Q9UK33 172 aa12.31□□□□□ -0.44
CCDC88B-210ENST00000494566 TSHBP01222 138 aa12.3□□□□□ -0.44
CCDC88B-210ENST00000494566 RAX2Q96IS3 184 aa12.3□□□□□ -0.44
CCDC88B-210ENST00000494566 CRYGDP07320 174 aa12.3□□□□□ -0.44
CCDC88B-210ENST00000494566 FAM159AQ6UWV7 190 aa12.3□□□□□ -0.44
CCDC88B-210ENST00000494566 MRAP2Q96G30 205 aa12.3□□□□□ -0.44
CCDC88B-210ENST00000494566 DUX3Q96PT4 197 aa12.3□□□□□ -0.44
CCDC88B-210ENST00000494566 MDFICQ9P1T7 246 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms