RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 HLA-DMBP28068 263 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 PPIFP30405 207 aaKnown RBP4.38□□□□□ -1.71
VPS41-214ENST00000490924 ARL3P36405 182 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 ID1P41134 155 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 POLR2KP53803 58 aaKnown RBP4.38□□□□□ -1.71
VPS41-214ENST00000490924 TCTAP57738 103 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 KRTAP10-11P60412 298 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 UBE2D3P61077 147 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 UBE2D2P62837 147 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 C21orf62-AS1Q17RA5 79 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 ECSCRQ19T08 205 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 PRR30Q53SZ7 412 aaPredicted RBP4.38□□□□□ -1.71
VPS41-214ENST00000490924 TCTEX1D4Q5JR98 221 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 C2orf66Q6UXQ4 117 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 GTSCR1Q86UQ5 136 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 NFE4Q86UQ8 179 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 GPHB5Q86YW7 130 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 BAALCQ8WXS3 180 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 DLX4Q92988 240 aaPredicted RBP4.38□□□□□ -1.71
VPS41-214ENST00000490924 RNF183Q96D59 192 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 KIR2DL4Q99706 377 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 DAZ1Q9NQZ3 744 aaKnown RBP4.38□□□□□ -1.71
VPS41-214ENST00000490924 PRO0461Q9UI25 63 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 UFC1Q9Y3C8 167 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 KIF25-AS1Q9Y6Z4 181 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 TEX48A0A1B0GUV7 120 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 IGIPA6NJ69 53 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 KRTAP29-1A8MX34 341 aaPredicted RBP4.37□□□□□ -1.71
VPS41-214ENST00000490924 H3BVH4 76 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 LGALS9O00182 355 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 LGALS1P09382 135 aaKnown RBP4.37□□□□□ -1.71
VPS41-214ENST00000490924 CD7P09564 240 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 GATA3P23771 443 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 S100A4P26447 101 aaKnown RBP4.37□□□□□ -1.71
VPS41-214ENST00000490924 LINC00315P59091 139 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 PMVKQ15126 192 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 NSUN5P1Q3KNT7 163 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 SBSPONQ8IVN8 264 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 RNF182Q8N6D2 247 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 SVIPQ8NHG7 77 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 PTH2Q96A98 100 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 ZNF256Q9Y2P7 627 aaPredicted RBP4.37□□□□□ -1.71
VPS41-214ENST00000490924 S4R3C0 116 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 MYO18BQ8IUG5 2567 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 PTPRQQ9UMZ3 2332 aa4.37□□□□□ -1.71
VPS41-214ENST00000490924 TEP1Q99973 2627 aaKnown RBP4.36□□□□□ -1.71
VPS41-214ENST00000490924 A0A1B0GV72 72 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 PRSS29PA6NIE9 313 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 GAS8-AS1O95177 125 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 IGHV3-23P01764 117 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 RNASE3P12724 160 aaKnown RBP4.36□□□□□ -1.71
VPS41-214ENST00000490924 GATA1P15976 413 aaPredicted RBP4.36□□□□□ -1.71
VPS41-214ENST00000490924 CFHR3Q02985 330 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 ZNF876PQ49A33 203 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 CFAP126Q5VTH2 177 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 MORN3Q6PF18 240 aaPredicted RBP4.36□□□□□ -1.71
VPS41-214ENST00000490924 MAPKAPK5-AS1Q8N8E1 139 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 SLC25A29Q8N8R3 303 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 NTN5Q8WTR8 489 aaPredicted RBP4.36□□□□□ -1.71
VPS41-214ENST00000490924 RAB37Q96AX2 223 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 PRADC1Q9BSG0 188 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 C1QTNF4Q9BXJ3 329 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 SPANXA1Q9NS26 97 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 PYGO1Q9Y3Y4 419 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 PCNX1Q96RV3 2341 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 ADGRG4Q8IZF6 3080 aa4.36□□□□□ -1.71
VPS41-214ENST00000490924 ABCA4P78363 2273 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 MYO9AB2RTY4 2548 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 IGLV4-69A0A075B6H9 119 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 TRAV2A0A0B4J234 112 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 A0A0B4J2C4 111 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 A0A0J9YY99 117 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 A6NDX4 124 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 SDHAF1A6NFY7 115 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 TMEM262E9PQX1 116 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 G3V318 75 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 RNASE4P34096 147 aaKnown RBP4.35□□□□□ -1.71
VPS41-214ENST00000490924 FXYD7P58549 80 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 RPL24P83731 157 aaKnown RBP4.35□□□□□ -1.71
VPS41-214ENST00000490924 PRB3Q04118 309 aaPredicted RBP4.35□□□□□ -1.71
VPS41-214ENST00000490924 SCGB2A2Q13296 93 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 ANXA2RQ3ZCQ2 193 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 PRR9Q5T870 116 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 C9orf85Q96MD7 179 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 PPDPFQ9H3Y8 114 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 MDFICQ9P1T7 246 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 BSNQ9UPA5 3926 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 PTPN13Q12923 2485 aa4.35□□□□□ -1.71
VPS41-214ENST00000490924 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.34□□□□□ -1.71
VPS41-214ENST00000490924 TRAV26-2A0A0B4J265 109 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 ZNF815PA8K554 130 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 A8MTW9 85 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 B5MCH6 92 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 K7ERJ3 54 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 DUSP14O95147 198 aaKnown RBP4.34□□□□□ -1.71
VPS41-214ENST00000490924 CRYGDP07320 174 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 P0DMU3 169 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 FAM231AP0DMU4 169 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 FAM231CP0DMU5 169 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 DSCR9P59020 149 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms