RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NCBP2LA6PVI3 153 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 A8MWV9 139 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 H3BVH4 76 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 K7EMI3 77 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 K7EMT4 169 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 CCL22O00626 93 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 SCRG1O75711 98 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 TCL1BO95988 128 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 CISD3P0C7P0 127 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 CRYGAP11844 174 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 HLA-DRB4P13762 266 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 COX7CP15954 63 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 MPV17P39210 176 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 MYCNOSP40205 109 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 RPL13AP40429 203 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 DYNLT3P51808 116 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 UBE2E1P51965 193 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF136P52737 540 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 FXYD2P54710 66 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 GFERP55789 205 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 HERVK_113P61574 105 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 SUPT4H1P63272 117 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 PRDX1Q06830 199 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 UNC119Q13432 240 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 ARFRP1Q13795 201 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF56Q15929 161 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF726P1Q15940 193 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 RTL8BQ17RB0 113 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 RSPO1Q2MKA7 263 aaPredicted RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 C12orf74Q32Q52 190 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 VMA21Q3ZAQ7 101 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM155Q4W5P6 130 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 FAM201AQ5SY85 155 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 MORN3Q6PF18 240 aaPredicted RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 AAED1Q7RTV5 226 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 MOB3BQ86TA1 216 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 LHFPL1Q86WI0 220 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 RPS19BP1Q86WX3 136 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 VKORC1L1Q8N0U8 176 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 SLC22A24Q8N4F4 322 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM252Q8N6L7 170 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 OR9G1Q8NH87 305 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 LRRC29Q8WV35 223 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 SRSF12Q8WXF0 261 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 H1FXQ92522 213 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 FAM3DQ96BQ1 224 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 UBE2E2Q96LR5 201 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 IGF2BP2-AS1Q96M15 143 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 SPACA5Q96QH8 159 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 SHANK2-AS3Q9BTD1 123 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 CYSTM1Q9H1C7 97 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF442Q9H7R0 627 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 HIGD1BQ9P298 99 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 SPRR3Q9UBC9 169 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 RPUSD1Q9UJJ7 312 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 U3KQK5 164 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 HLA-DRB4X5D2U9 266 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 INTS1Q8N201 2190 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 NCOA6Q14686 2063 aaPredicted RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 TRAV41A0A0B4J266 112 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV6-21A0A0C4DH24 114 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 IGHV1-24A0A0C4DH33 117 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 A0A0J9YXY3 114 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 TRBV7-7A0A0K0K1E9 115 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 FAM240AA0A1B0GVK7 77 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 TCRBV4S1A1TA0A5B7 111 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 H3BSH0 61 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 CRXO43186 299 aaPredicted RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 SSSCA1O60232 199 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 CST7O76096 145 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 NCR2O95944 276 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV1D-16P01601 117 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 IGKCP01834 107 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 TCRAP04437 139 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 SCGB1C2P0DMR2 95 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 PYYP10082 97 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 COX6A1P12074 109 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 CTLA4P16410 223 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 NPPCP23582 126 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 HLA-DMBP28068 263 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 LOXP28300 417 aaPredicted RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 EFNA4P52798 201 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 APOC4P55056 127 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 LOXL1Q08397 574 aaPredicted RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 DAZ2Q13117 558 aaKnown RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 EBI3Q14213 229 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 NSUN5P1Q3KNT7 163 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 LINC01545Q5VT33 79 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 C22orf39Q6P5X5 142 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 CEMP1Q6PRD7 247 aaPredicted RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 ZFP2Q6ZN57 461 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 DGAT2L6Q6ZPD8 337 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 SLC25A48Q6ZT89 311 aaKnown RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 C6orf201Q7Z4U5 140 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 LYZL2Q7Z4W2 148 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 DAZ4Q86SG3 579 aaKnown RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 SBSPONQ8IVN8 264 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 C1orf158Q8N1D5 194 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 DRAM1Q8N682 238 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF645Q8N7E2 425 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms