RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 TRBV6-4A0A1B0GX49 114 aa7.58□□□□□ -1.2
VPS13D-210ENST00000489961 CRYGDP07320 174 aa7.58□□□□□ -1.2
VPS13D-210ENST00000489961 SMIM17P0DL12 118 aa7.58□□□□□ -1.2
VPS13D-210ENST00000489961 PNRC1Q12796 327 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-210ENST00000489961 RHOHQ15669 191 aa7.58□□□□□ -1.2
VPS13D-210ENST00000489961 MRPL23Q16540 153 aaKnown RBP7.58□□□□□ -1.2
VPS13D-210ENST00000489961 UFSP1Q6NVU6 142 aa7.58□□□□□ -1.2
VPS13D-210ENST00000489961 TSKUQ8WUA8 353 aa7.58□□□□□ -1.2
VPS13D-210ENST00000489961 BORCS7Q96B45 105 aa7.58□□□□□ -1.2
VPS13D-210ENST00000489961 SAMD10Q9BYL1 202 aa7.58□□□□□ -1.2
VPS13D-210ENST00000489961 GFRA4Q9GZZ7 299 aa7.58□□□□□ -1.2
VPS13D-210ENST00000489961 A0A096LPF7 62 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 TMEM218A2RU14 115 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 FAM231BA6NCW3 169 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 TRGC1P0CF51 173 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 GYPEP15421 78 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 CCL18P55774 89 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 RNF212Q495C1 297 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 SLC25A29Q8N8R3 303 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 GTSF1Q8WW33 167 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 CNFNQ9BYD5 112 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 V9GYV3 84 aa7.57□□□□□ -1.2
VPS13D-210ENST00000489961 F8W036 122 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 K7EQD1 137 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 PPP1R2P9O14990 202 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 NTF3P20783 257 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 SRIP30626 198 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 FOXA3P55318 350 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-210ENST00000489961 TWIST1Q15672 202 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 ZNF56Q15929 161 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 SH2D6Q7Z4S9 175 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 C14orf178Q8N769 122 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-210ENST00000489961 PGLYRP4Q96LB8 373 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 MSRB1Q9NZV6 116 aa7.56□□□□□ -1.2
VPS13D-210ENST00000489961 DYNC2H1Q8NCM8 4307 aaKnown RBP7.56□□□□□ -1.2
VPS13D-210ENST00000489961 LOC100131303A0A0U1RQF7 123 aa7.55□□□□□ -1.2
VPS13D-210ENST00000489961 HIGD1CA8MV81 97 aa7.55□□□□□ -1.2
VPS13D-210ENST00000489961 F5H697 171 aa7.55□□□□□ -1.2
VPS13D-210ENST00000489961 FAM3BP58499 235 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-210ENST00000489961 RAB4BP61018 213 aa7.55□□□□□ -1.2
VPS13D-210ENST00000489961 SMIM15Q7Z3B0 74 aa7.55□□□□□ -1.2
VPS13D-210ENST00000489961 NEGR1Q7Z3B1 354 aa7.55□□□□□ -1.2
VPS13D-210ENST00000489961 A0A1B0GUT8 65 aa7.54□□□□□ -1.2
VPS13D-210ENST00000489961 MT-ND4LP03901 98 aa7.54□□□□□ -1.2
VPS13D-210ENST00000489961 MGPP08493 103 aa7.54□□□□□ -1.2
VPS13D-210ENST00000489961 Q6ZSN1 163 aa7.54□□□□□ -1.2
VPS13D-210ENST00000489961 SEC11CQ9BY50 192 aa7.54□□□□□ -1.2
VPS13D-210ENST00000489961 DPH3P1Q9H4G8 78 aa7.54□□□□□ -1.2
VPS13D-210ENST00000489961 NAT8BQ9UHF3 227 aa7.54□□□□□ -1.2
VPS13D-210ENST00000489961 KIF25-AS1Q9Y6Z4 181 aa7.54□□□□□ -1.2
VPS13D-210ENST00000489961 TRBV10-1A0A0K0K1A3 114 aa7.53□□□□□ -1.2
VPS13D-210ENST00000489961 SMIM27A0A1W2PRY6 76 aa7.53□□□□□ -1.2
VPS13D-210ENST00000489961 ADCYAP1P18509 176 aa7.53□□□□□ -1.2
VPS13D-210ENST00000489961 EVI2AP22794 236 aa7.53□□□□□ -1.2
VPS13D-210ENST00000489961 ESRGQ1W209 222 aa7.53□□□□□ -1.2
VPS13D-210ENST00000489961 NUP35Q8NFH5 326 aa7.53□□□□□ -1.2
VPS13D-210ENST00000489961 ANAPC16Q96DE5 110 aa7.53□□□□□ -1.2
VPS13D-210ENST00000489961 LINC00588Q9Y4M8 146 aa7.53□□□□□ -1.2
VPS13D-210ENST00000489961 GAGE12JA6NER3 117 aa7.52□□□□□ -1.21
VPS13D-210ENST00000489961 H7C1H1 209 aa7.52□□□□□ -1.21
VPS13D-210ENST00000489961 GAGE1Q13065 139 aa7.52□□□□□ -1.21
VPS13D-210ENST00000489961 GAGE4Q13068 117 aa7.52□□□□□ -1.21
VPS13D-210ENST00000489961 GAGE5Q13069 117 aa7.52□□□□□ -1.21
VPS13D-210ENST00000489961 RIGQ13278 110 aa7.52□□□□□ -1.21
VPS13D-210ENST00000489961 GAGE13Q4V321 117 aa7.52□□□□□ -1.21
VPS13D-210ENST00000489961 MRPS16Q9Y3D3 137 aaKnown RBP7.52□□□□□ -1.21
VPS13D-210ENST00000489961 LINC00315P59091 139 aa7.51□□□□□ -1.21
VPS13D-210ENST00000489961 RPL36AP83881 106 aaKnown RBP7.51□□□□□ -1.21
VPS13D-210ENST00000489961 LYPD5Q6UWN5 251 aa7.51□□□□□ -1.21
VPS13D-210ENST00000489961 ATP6V0E2Q8NHE4 81 aa7.51□□□□□ -1.21
VPS13D-210ENST00000489961 ZNRF2Q8NHG8 242 aa7.51□□□□□ -1.21
VPS13D-210ENST00000489961 RPL36ALQ969Q0 106 aaKnown RBP7.51□□□□□ -1.21
VPS13D-210ENST00000489961 ALMS1Q8TCU4 4167 aa7.5□□□□□ -1.21
VPS13D-210ENST00000489961 TRBV7-3A0A075B6L6 115 aa7.5□□□□□ -1.21
VPS13D-210ENST00000489961 TIRAPP58753 221 aa7.5□□□□□ -1.21
VPS13D-210ENST00000489961 C10orf91Q5T1B1 145 aa7.5□□□□□ -1.21
VPS13D-210ENST00000489961 SUMO4Q6EEV6 95 aa7.5□□□□□ -1.21
VPS13D-210ENST00000489961 UPK3BQ9BT76 320 aa7.5□□□□□ -1.21
VPS13D-210ENST00000489961 CARHSP1Q9Y2V2 147 aaKnown RBP7.5□□□□□ -1.21
VPS13D-210ENST00000489961 PLECQ15149 4684 aaKnown RBP7.49□□□□□ -1.21
VPS13D-210ENST00000489961 A0A1B0GW15 77 aa7.49□□□□□ -1.21
VPS13D-210ENST00000489961 LINC00694P0DN24 101 aa7.49□□□□□ -1.21
VPS13D-210ENST00000489961 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-210ENST00000489961 NEXN-AS1Q8NBZ9 246 aa7.49□□□□□ -1.21
VPS13D-210ENST00000489961 DNAJC30Q96LL9 226 aa7.49□□□□□ -1.21
VPS13D-210ENST00000489961 CTDSP1Q9GZU7 261 aa7.49□□□□□ -1.21
VPS13D-210ENST00000489961 TMEM191AQ9H0A3 160 aa7.49□□□□□ -1.21
VPS13D-210ENST00000489961 GTSF1LQ9H1H1 148 aa7.49□□□□□ -1.21
VPS13D-210ENST00000489961 Q9UF83 564 aa7.49□□□□□ -1.21
VPS13D-210ENST00000489961 IGLV2-18A0A075B6J9 118 aa7.48□□□□□ -1.21
VPS13D-210ENST00000489961 M0QY20 66 aa7.48□□□□□ -1.21
VPS13D-210ENST00000489961 S100A8P05109 93 aa7.48□□□□□ -1.21
VPS13D-210ENST00000489961 NDUFA5Q16718 116 aa7.48□□□□□ -1.21
VPS13D-210ENST00000489961 RASL11AQ6T310 242 aa7.48□□□□□ -1.21
VPS13D-210ENST00000489961 Q9H8V8 135 aa7.48□□□□□ -1.21
VPS13D-210ENST00000489961 TNFRSF18Q9Y5U5 241 aa7.48□□□□□ -1.21
VPS13D-210ENST00000489961 LYSTQ99698 3801 aa7.47□□□□□ -1.21
VPS13D-210ENST00000489961 A0A087WWC5 75 aa7.47□□□□□ -1.21
VPS13D-210ENST00000489961 TRAV8-6A0A0B4J262 113 aa7.47□□□□□ -1.21
VPS13D-210ENST00000489961 SIVA1O15304 175 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms