RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	TEX15	Q9BXT5	2789 aa		4.08	□□□□□ -1.76
ATG4A-208	ENST00000489247	NXT2	Q9NPJ8	142 aa	Known RBP	4.08	□□□□□ -1.76
ATG4A-208	ENST00000489247	MSRB1	Q9NZV6	116 aa		4.08	□□□□□ -1.76
ATG4A-208	ENST00000489247	ZNF256	Q9Y2P7	627 aa	Predicted RBP	4.08	□□□□□ -1.76
ATG4A-208	ENST00000489247	TLN2	Q9Y4G6	2542 aa		4.08	□□□□□ -1.76
ATG4A-208	ENST00000489247	KIF25-AS1	Q9Y6Z4	181 aa		4.08	□□□□□ -1.76
ATG4A-208	ENST00000489247	MAP1A	P78559	2803 aa	Predicted RBP	4.08	□□□□□ -1.76
ATG4A-208	ENST00000489247	ITPR2	Q14571	2701 aa		4.08	□□□□□ -1.76
ATG4A-208	ENST00000489247	FASN	P49327	2511 aa	Known RBP	4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	IGHV3-16	A0A0C4DH30	117 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	C20orf202	A1L168	122 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	LINC00587	B1AMM8	73 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	TSTD3	H0UI37	97 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247		H3BMM0	161 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247		H3BVH4	76 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247		K7EMI3	77 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	SCGB1D1	O95968	90 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	NPY	P01303	97 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	EVI2A	P22794	236 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	CKS2	P33552	79 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	RNASE4	P34096	147 aa	Known RBP	4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	CMC4	P56277	68 aa	Predicted RBP	4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	LINC00315	P59091	139 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	SPANXN1	Q5VSR9	72 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	PET117	Q6UWS5	81 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	FA2H	Q7L5A8	372 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	MRPL52	Q86TS9	123 aa	Known RBP	4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	FAM19A2	Q8N3H0	131 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	CITED2	Q99967	270 aa	Predicted RBP	4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	C20orf78	Q9BR46	151 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	MAP6D1	Q9H9H5	199 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	EDA2R	Q9HAV5	297 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	HSPB8	Q9UJY1	196 aa		4.07	□□□□□ -1.76
ATG4A-208	ENST00000489247	SON	P18583	2426 aa	Known RBP	4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	IGKV3-7	A0A075B6H7	116 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	IGHV1OR15-1	A0A075B7D0	117 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	MUC21	A0A0G2JKD1	596 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	MUC21	A0A140T8X8	626 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	PCP4L1	A6NKN8	68 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	SYS1-DBNDD2	H3BUS1	97 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	LEPROTL1	O95214	131 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	PPP1R17	O96001	155 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	DDT	P30046	118 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	DEFB131A	P59861	70 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	KRTDAP	P60985	99 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	MUC21	Q5SSG8	566 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	LINC01545	Q5VT33	79 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	FAM159A	Q6UWV7	190 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	NDUFA11	Q86Y39	141 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247		Q8N8P6	123 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	PRSS3P2	Q8NHM4	247 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	DYNLRB2	Q8TF09	96 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	AP1S3	Q96PC3	154 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	NDUFAF3	Q9BU61	184 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	TMEM70	Q9BUB7	260 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	MAP1LC3A	Q9H492	121 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	DPH3P1	Q9H4G8	78 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	PHLDA3	Q9Y5J5	127 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	HECTD1	Q9ULT8	2610 aa		4.06	□□□□□ -1.76
ATG4A-208	ENST00000489247	TRBV6-5	A0A0K0K1A5	114 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	RBMY1B	A6NDE4	496 aa	Known RBP	4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	RBMY1E	A6NEQ0	496 aa	Known RBP	4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	GNRH2	O43555	120 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	IGLV1-51	P01701	117 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	HBD	P02042	147 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	RBMY1D	P0C7P1	496 aa	Known RBP	4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	S100A4	P26447	101 aa	Known RBP	4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	IFI27	P40305	119 aa	Predicted RBP	4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	TFPI2	P48307	235 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	CTAG1A	P78358	180 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	ODF3L2	Q3SX64	289 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	SERTAD4-AS1	Q5TG53	156 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	CFAP161	Q6P656	301 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	DUX3	Q96PT4	197 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	VAMP8	Q9BV40	100 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	MAP1LC3C	Q9BXW4	147 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	ACAN	P16112	2415 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	HIVEP2	P31629	2446 aa		4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	GCN1	Q92616	2671 aa	Known RBP	4.05	□□□□□ -1.76
ATG4A-208	ENST00000489247	OTOG	Q6ZRI0	2925 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	TRAV9-2	A0A087WT02	112 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	TRAV12-3	A0A0B4J271	114 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	LINC01549	A6NIU2	74 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	KNCN	A6PVL3	124 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	SMKR1	H3BMG3	65 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	CRLF1	O75462	422 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	GAS8-AS1	O95177	125 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	NCR2	O95944	276 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	RBMY1A1	P0DJD3	496 aa	Known RBP	4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	RBMY1C	P0DJD4	496 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	FCER1G	P30273	86 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	RBMY1F	Q15415	496 aa	Known RBP	4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	SPINK13	Q1W4C9	94 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	LGALS9B	Q3B8N2	356 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	LGALS9C	Q6DKI2	356 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	LINC00173	Q6ZV60	143 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	TRPT1	Q86TN4	253 aa	Known RBP	4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	LURAP1L	Q8IV03	231 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	RASL10A	Q92737	203 aa		4.04	□□□□□ -1.76
ATG4A-208	ENST00000489247	SMR3A	Q99954	134 aa		4.04	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms