RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 WISP2O76076 250 aa13.57□□□□□ -0.24
NPHP4-209ENST00000489180 ZFP36P26651 326 aaKnown RBP13.56□□□□□ -0.24
NPHP4-209ENST00000489180 NCKAP5O14513 1909 aa13.56□□□□□ -0.24
NPHP4-209ENST00000489180 LINC01620Q4KN68 170 aa13.56□□□□□ -0.24
NPHP4-209ENST00000489180 Q8N7P7 452 aa13.56□□□□□ -0.24
NPHP4-209ENST00000489180 C11orf1Q9H5F2 150 aa13.56□□□□□ -0.24
NPHP4-209ENST00000489180 PRB2P02812 416 aaPredicted RBP13.56□□□□□ -0.24
NPHP4-209ENST00000489180 C9orf47Q6ZRZ4 202 aa13.56□□□□□ -0.24
NPHP4-209ENST00000489180 ATP6V0E2Q8NHE4 81 aa13.56□□□□□ -0.24
NPHP4-209ENST00000489180 CLEC2BQ92478 149 aa13.56□□□□□ -0.24
NPHP4-209ENST00000489180 MED13LQ71F56 2210 aa13.55□□□□□ -0.24
NPHP4-209ENST00000489180 SEM1Q6ZVN7 128 aa13.55□□□□□ -0.24
NPHP4-209ENST00000489180 C16orf74Q96GX8 76 aa13.55□□□□□ -0.24
NPHP4-209ENST00000489180 NUP210Q8TEM1 1887 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-209ENST00000489180 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.55□□□□□ -0.247e-7■■■■□ 24.4
NPHP4-209ENST00000489180 MSMPQ1L6U9 139 aa13.55□□□□□ -0.24
NPHP4-209ENST00000489180 C11orf86A6NJI1 115 aa13.54□□□□□ -0.24
NPHP4-209ENST00000489180 NCR3O14931 201 aa13.54□□□□□ -0.24
NPHP4-209ENST00000489180 COL4A3Q01955 1670 aa13.54□□□□□ -0.24
NPHP4-209ENST00000489180 OPRPNQ99935 248 aaPredicted RBP13.54□□□□□ -0.24
NPHP4-209ENST00000489180 LOXL1Q08397 574 aaPredicted RBP13.54□□□□□ -0.24
NPHP4-209ENST00000489180 TEN1Q86WV5 123 aa13.54□□□□□ -0.24
NPHP4-209ENST00000489180 ZNF503Q96F45 646 aa13.54□□□□□ -0.24
NPHP4-209ENST00000489180 CAMK2N2Q96S95 79 aa13.54□□□□□ -0.24
NPHP4-209ENST00000489180 ACYP1P07311 99 aa13.53□□□□□ -0.24
NPHP4-209ENST00000489180 ODF1Q14990 250 aa13.53□□□□□ -0.24
NPHP4-209ENST00000489180 PIFOQ8TCI5 191 aa13.53□□□□□ -0.24
NPHP4-209ENST00000489180 ARHGAP21Q5T5U3 1957 aa13.53□□□□□ -0.24
NPHP4-209ENST00000489180 CTRLP40313 264 aa13.53□□□□□ -0.24
NPHP4-209ENST00000489180 DAZ2Q13117 558 aaKnown RBP13.53□□□□□ -0.24
NPHP4-209ENST00000489180 DAZ4Q86SG3 579 aaKnown RBP13.53□□□□□ -0.24
NPHP4-209ENST00000489180 DAZ3Q9NR90 486 aaKnown RBP13.53□□□□□ -0.24
NPHP4-209ENST00000489180 CREBBPQ92793 2442 aa13.53□□□□□ -0.24
NPHP4-209ENST00000489180 HIGD1BQ9P298 99 aa13.53□□□□□ -0.24
NPHP4-209ENST00000489180 TRBV12-3P01733 135 aa13.52□□□□□ -0.24
NPHP4-209ENST00000489180 CHD3Q12873 2000 aaKnown RBP13.52□□□□□ -0.24
NPHP4-209ENST00000489180 E9PLD3 99 aa13.52□□□□□ -0.24
NPHP4-209ENST00000489180 COX7A2LO14548 114 aa13.52□□□□□ -0.24
NPHP4-209ENST00000489180 IGLV1-47P01700 117 aa13.52□□□□□ -0.24
NPHP4-209ENST00000489180 C1orf43Q9BWL3 253 aa13.52□□□□□ -0.24
NPHP4-209ENST00000489180 FAM236AA0A1B0GUQ0 79 aa13.52□□□□□ -0.25
NPHP4-209ENST00000489180 FAM236BA0A1B0GV22 79 aa13.52□□□□□ -0.25
NPHP4-209ENST00000489180 A0A1W2PNU3 283 aaPredicted RBP13.51□□□□□ -0.25
NPHP4-209ENST00000489180 FOXI1Q12951 378 aa13.51□□□□□ -0.25
NPHP4-209ENST00000489180 A0A0B4J2C4 111 aa13.51□□□□□ -0.25
NPHP4-209ENST00000489180 J3QKU1 62 aa13.51□□□□□ -0.25
NPHP4-209ENST00000489180 ADORA2A-AS1P86434 159 aa13.51□□□□□ -0.25
NPHP4-209ENST00000489180 C19orf71A6NCJ1 209 aa13.51□□□□□ -0.25
NPHP4-209ENST00000489180 C2orf70A6NJV1 201 aa13.51□□□□□ -0.25
NPHP4-209ENST00000489180 IGHG2P01859 326 aa13.51□□□□□ -0.25
NPHP4-209ENST00000489180 UNQ9165/PRO28630Q6UXU0 137 aa13.51□□□□□ -0.25
NPHP4-209ENST00000489180 KIF26AQ9ULI4 1882 aaPredicted RBP13.51□□□□□ -0.25
NPHP4-209ENST00000489180 PTH2Q96A98 100 aa13.5□□□□□ -0.25
NPHP4-209ENST00000489180 MDFICQ9P1T7 246 aa13.5□□□□□ -0.25
NPHP4-209ENST00000489180 ETDCA0A1B0GVM5 59 aa13.5□□□□□ -0.25
NPHP4-209ENST00000489180 LGALS9O00182 355 aa13.5□□□□□ -0.25
NPHP4-209ENST00000489180 A0A1B0GX51 115 aa13.5□□□□□ -0.25
NPHP4-209ENST00000489180 LINC00322Q6ZN03 302 aaPredicted RBP13.5□□□□□ -0.25
NPHP4-209ENST00000489180 ZGRF1Q86YA3 2104 aa13.5□□□□□ -0.25
NPHP4-209ENST00000489180 IGKV1D-37A0A075B6S9 117 aa13.49□□□□□ -0.25
NPHP4-209ENST00000489180 CEMP1Q6PRD7 247 aaPredicted RBP13.49□□□□□ -0.25
NPHP4-209ENST00000489180 RNF152Q8N8N0 203 aa13.49□□□□□ -0.25
NPHP4-209ENST00000489180 H0YGX0 51 aa13.49□□□□□ -0.25
NPHP4-209ENST00000489180 DEFB4AO15263 64 aa13.49□□□□□ -0.25
NPHP4-209ENST00000489180 SMIM20Q8N5G0 67 aa13.49□□□□□ -0.25
NPHP4-209ENST00000489180 TRBV7-3A0A075B6L6 115 aa13.49□□□□□ -0.25
NPHP4-209ENST00000489180 DEFB113Q30KQ7 82 aa13.49□□□□□ -0.25
NPHP4-209ENST00000489180 Q6ZPA2 131 aa13.49□□□□□ -0.25
NPHP4-209ENST00000489180 C10orf105Q8TEF2 133 aa13.48□□□□□ -0.25
NPHP4-209ENST00000489180 ZNF80P51504 273 aaPredicted RBP13.48□□□□□ -0.25
NPHP4-209ENST00000489180 LECT2O14960 151 aa13.48□□□□□ -0.25
NPHP4-209ENST00000489180 TP73-AS1Q9UF72 201 aa13.48□□□□□ -0.25
NPHP4-209ENST00000489180 TIMM17AQ99595 171 aa13.47□□□□□ -0.25
NPHP4-209ENST00000489180 TMEM258P61165 79 aa13.47□□□□□ -0.25
NPHP4-209ENST00000489180 GDF5OSQ5U4N7 250 aa13.47□□□□□ -0.25
NPHP4-209ENST00000489180 VSIG2Q96IQ7 327 aa13.47□□□□□ -0.25
NPHP4-209ENST00000489180 TMEM61Q8N0U2 210 aa13.47□□□□□ -0.25
NPHP4-209ENST00000489180 OBSL1O75147 1896 aa13.47□□□□□ -0.25
NPHP4-209ENST00000489180 ATP5G1P05496 136 aa13.47□□□□□ -0.25
NPHP4-209ENST00000489180 MRPL23Q16540 153 aaKnown RBP13.47□□□□□ -0.25
NPHP4-209ENST00000489180 FANCD2OSQ96PS1 177 aa13.47□□□□□ -0.25
NPHP4-209ENST00000489180 C5orf47Q569G3 176 aa13.46□□□□□ -0.25
NPHP4-209ENST00000489180 FUSP35637 526 aaKnown RBP eCLIP13.46□□□□□ -0.25
NPHP4-209ENST00000489180 IGLV2-8P01709 118 aa13.46□□□□□ -0.25
NPHP4-209ENST00000489180 SPATA12Q7Z6I5 190 aa13.46□□□□□ -0.25
NPHP4-209ENST00000489180 HHLA3Q9XRX5 114 aa13.46□□□□□ -0.25
NPHP4-209ENST00000489180 ZMAT4Q9H898 229 aa13.46□□□□□ -0.26
NPHP4-209ENST00000489180 BRWD1-AS2P59051 145 aa13.45□□□□□ -0.26
NPHP4-209ENST00000489180 G3V4G9 280 aa13.45□□□□□ -0.26
NPHP4-209ENST00000489180 C9orf66Q5T8R8 295 aa13.45□□□□□ -0.26
NPHP4-209ENST00000489180 P0C879 139 aa13.45□□□□□ -0.26
NPHP4-209ENST00000489180 TRBV10-2A0A0K0K1G8 114 aa13.44□□□□□ -0.26
NPHP4-209ENST00000489180 NFE4Q86UQ8 179 aa13.44□□□□□ -0.26
NPHP4-209ENST00000489180 TNRC6AQ8NDV7 1962 aaKnown RBP13.44□□□□□ -0.26
NPHP4-209ENST00000489180 SPART-AS1P0CW21 52 aa13.44□□□□□ -0.26
NPHP4-209ENST00000489180 TRBV6-1A0A0K0K1D8 114 aa13.44□□□□□ -0.26
NPHP4-209ENST00000489180 PROP1O75360 226 aa13.44□□□□□ -0.26
NPHP4-209ENST00000489180 MIR7-3HGQ8N6C7 128 aa13.44□□□□□ -0.26
NPHP4-209ENST00000489180 TP53TG3Q9ULZ0 132 aa13.44□□□□□ -0.26
NPHP4-209ENST00000489180 A0A1B0GXF2 115 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms