RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 RPS25P62851 125 aaKnown RBP0.26□□□□□ -2.37
PTPN4-212ENST00000488896 ALX1Q15699 326 aa0.26□□□□□ -2.37
PTPN4-212ENST00000488896 SMIM21Q3B7S5 101 aa0.26□□□□□ -2.37
PTPN4-212ENST00000488896 C9orf116Q5BN46 136 aaPredicted RBP0.26□□□□□ -2.37
PTPN4-212ENST00000488896 SLC48A1Q6P1K1 146 aa0.26□□□□□ -2.37
PTPN4-212ENST00000488896 VSTM2AQ8TAG5 236 aa0.26□□□□□ -2.37
PTPN4-212ENST00000488896 ERCC6Q03468 1493 aa0.26□□□□□ -2.37
PTPN4-212ENST00000488896 CDK12Q9NYV4 1490 aaPredicted RBP0.26□□□□□ -2.37
PTPN4-212ENST00000488896 CASZ1Q86V15 1759 aa0.26□□□□□ -2.37
PTPN4-212ENST00000488896 RREB1Q92766 1687 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 DISP2A7MBM2 1401 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 SOGA1O94964 1423 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 PTPRGP23470 1445 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 FAM25AB3EWG3 89 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 FAM25CB3EWG5 89 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 FAM25GB3EWG6 89 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 NPFFO15130 113 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 SPINK1P00995 79 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 APODP05090 189 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 HIST1H1DP16402 221 aaKnown RBP0.25□□□□□ -2.37
PTPN4-212ENST00000488896 COX6A2Q02221 97 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 EMX2Q04743 252 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 CCDC58Q4VC31 144 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 Q6ZUT4 128 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 SEC11CQ9BY50 192 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 BPESC1Q9GZL8 116 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 FAM107BQ9H098 131 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 ASH1LQ9NR48 2969 aaKnown RBP0.25□□□□□ -2.37
PTPN4-212ENST00000488896 F5P12259 2224 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 CADP27708 2225 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 MYH6P13533 1939 aa0.25□□□□□ -2.37
PTPN4-212ENST00000488896 FRAS1Q86XX4 4008 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 ZCCHC11Q5TAX3 1644 aaKnown RBP0.24□□□□□ -2.37
PTPN4-212ENST00000488896 A0A096LNT2 108 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 TRGV1A0A0A0MS02 117 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 MCRIP1C9JLW8 97 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 NDUFB6O95139 128 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 KRTAP2-3P0C7H8 128 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 CCL3L1P16619 93 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 GCHFRP30047 84 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 GUCA1AP43080 201 aaPredicted RBP0.24□□□□□ -2.37
PTPN4-212ENST00000488896 NDUFA11Q86Y39 141 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 FAM213BQ8TBF2 198 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 SMIM11BQ8TCY0 68 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 C10orf82Q8WW14 230 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 KRTAP2-4Q9BYR9 128 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 KRTAP2-1Q9BYU5 128 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 PROK2Q9HC23 129 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 NPVFQ9HCQ7 196 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 GPR98Q8WXG9 6306 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 DLEC1Q9Y238 1755 aa0.24□□□□□ -2.37
PTPN4-212ENST00000488896 KIAA0100Q14667 2235 aaKnown RBP0.23□□□□□ -2.37
PTPN4-212ENST00000488896 TANC1Q9C0D5 1861 aa0.23□□□□□ -2.37
PTPN4-212ENST00000488896 GVQW2A0A096LPI5 108 aaPredicted RBP0.23□□□□□ -2.37
PTPN4-212ENST00000488896 IFNA17P01571 189 aa0.23□□□□□ -2.37
PTPN4-212ENST00000488896 NMBP08949 121 aa0.23□□□□□ -2.37
PTPN4-212ENST00000488896 EDDM3BP56851 147 aa0.23□□□□□ -2.37
PTPN4-212ENST00000488896 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.23□□□□□ -2.37
PTPN4-212ENST00000488896 Q6ZRX8 168 aa0.23□□□□□ -2.37
PTPN4-212ENST00000488896 TCEAL4Q96EI5 215 aa0.23□□□□□ -2.37
PTPN4-212ENST00000488896 CACNA1CQ13936 2221 aa0.23□□□□□ -2.37
PTPN4-212ENST00000488896 KDM5CP41229 1560 aa0.23□□□□□ -2.37
PTPN4-212ENST00000488896 OVOS2A0A0J9YW53 1432 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 BLMP54132 1417 aaPredicted RBP0.22□□□□□ -2.37
PTPN4-212ENST00000488896 OVOS2Q6IE36 1432 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 PITX3O75364 302 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 TSPAN19P0C672 248 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 IFITM1P13164 125 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 CBLN1P23435 193 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 ARPC4P59998 168 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 RBM3P98179 157 aaKnown RBP0.22□□□□□ -2.37
PTPN4-212ENST00000488896 SCIMPQ6UWF3 145 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 PDCD10Q9BUL8 212 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 LINC00312Q9Y6C7 94 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 UHRF1BP1LA0JNW5 1464 aa0.22□□□□□ -2.37
PTPN4-212ENST00000488896 IBTKQ9P2D0 1353 aaPredicted RBP0.21□□□□□ -2.38
PTPN4-212ENST00000488896 AHCTF1Q8WYP5 2266 aa0.21□□□□□ -2.38
PTPN4-212ENST00000488896 TMEM14DPA8MWL7 114 aa0.21□□□□□ -2.38
PTPN4-212ENST00000488896 GNG7O60262 68 aa0.21□□□□□ -2.38
PTPN4-212ENST00000488896 Q5BKY6 102 aa0.21□□□□□ -2.38
PTPN4-212ENST00000488896 DPH3Q96FX2 82 aa0.21□□□□□ -2.38
PTPN4-212ENST00000488896 Q96NJ1 140 aa0.21□□□□□ -2.38
PTPN4-212ENST00000488896 TSC22D3Q99576 134 aa0.21□□□□□ -2.38
PTPN4-212ENST00000488896 SCP2D1Q9UJQ7 156 aa0.21□□□□□ -2.38
PTPN4-212ENST00000488896 NAV2Q8IVL1 2488 aa0.21□□□□□ -2.38
PTPN4-212ENST00000488896 PLXNA2O75051 1894 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 TPRP12270 2363 aaKnown RBP0.2□□□□□ -2.38
PTPN4-212ENST00000488896 PTPRZ1P23471 2315 aaPredicted RBP0.2□□□□□ -2.38
PTPN4-212ENST00000488896 A0A087WTM6 91 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 PIGBOS1A0A0B4J2F0 54 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 ZNF815PA8K554 130 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 NCR2O95944 276 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 CFDP00746 253 aaPredicted RBP0.2□□□□□ -2.38
PTPN4-212ENST00000488896 C10orf128Q5T292 105 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 SSBP3-AS1Q7Z2R9 100 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 BAGE3Q86Y29 109 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 UBE2DNLQ8IWF7 75 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 COPS9Q8WXC6 57 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 TMEM191AQ9H0A3 160 aa0.2□□□□□ -2.38
PTPN4-212ENST00000488896 CCDC167Q9P0B6 97 aa0.2□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms