RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 OCC1Q8TAD7 63 aa8.37□□□□□ -1.07
SDC3-204ENST00000487984 DAZAP1Q96EP5 407 aaKnown RBP8.37□□□□□ -1.07
SDC3-204ENST00000487984 TNFRSF18Q9Y5U5 241 aa8.37□□□□□ -1.07
SDC3-204ENST00000487984 TRBV20OR9-2A0A075B6H5 130 aa8.36□□□□□ -1.07
SDC3-204ENST00000487984 SMUG1Q53HV7 270 aa8.36□□□□□ -1.07
SDC3-204ENST00000487984 WFDC10BQ8IUB3 73 aa8.36□□□□□ -1.07
SDC3-204ENST00000487984 KCNS1Q96KK3 526 aa8.36□□□□□ -1.07
SDC3-204ENST00000487984 LOC100131303A0A0U1RQF7 123 aa8.35□□□□□ -1.07
SDC3-204ENST00000487984 GCGP01275 180 aa8.35□□□□□ -1.07
SDC3-204ENST00000487984 ZNF80P51504 273 aaPredicted RBP8.35□□□□□ -1.07
SDC3-204ENST00000487984 COX8CQ7Z4L0 72 aa8.35□□□□□ -1.07
SDC3-204ENST00000487984 ISOC2Q96AB3 205 aa8.35□□□□□ -1.07
SDC3-204ENST00000487984 ANAPC16Q96DE5 110 aa8.35□□□□□ -1.07
SDC3-204ENST00000487984 MLST8Q9BVC4 326 aa8.35□□□□□ -1.07
SDC3-204ENST00000487984 CTDSP1Q9GZU7 261 aa8.35□□□□□ -1.07
SDC3-204ENST00000487984 RPS10P5Q9NQ39 176 aa8.35□□□□□ -1.07
SDC3-204ENST00000487984 C11orf21Q9P2W6 132 aa8.35□□□□□ -1.07
SDC3-204ENST00000487984 A0A087WWC5 75 aa8.34□□□□□ -1.07
SDC3-204ENST00000487984 C7orf77A4D0Y5 90 aa8.34□□□□□ -1.07
SDC3-204ENST00000487984 PGPEP1LA6NFU8 196 aa8.34□□□□□ -1.07
SDC3-204ENST00000487984 IGLV2-8P01709 118 aa8.34□□□□□ -1.07
SDC3-204ENST00000487984 GATA1P15976 413 aaPredicted RBP8.34□□□□□ -1.07
SDC3-204ENST00000487984 ERVFC1-1P60608 527 aa8.34□□□□□ -1.07
SDC3-204ENST00000487984 NFE4Q86UQ8 179 aa8.34□□□□□ -1.07
SDC3-204ENST00000487984 SFRP2Q96HF1 295 aa8.34□□□□□ -1.07
SDC3-204ENST00000487984 OSTCQ9NRP0 149 aa8.34□□□□□ -1.07
SDC3-204ENST00000487984 TRAV9-2A0A087WT02 112 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 PFN1P07737 140 aaKnown RBP8.33□□□□□ -1.08
SDC3-204ENST00000487984 DNAH10OSP0CZ25 163 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 FUSP35637 526 aaKnown RBP eCLIP8.33□□□□□ -1.08
SDC3-204ENST00000487984 FAM162BQ5T6X4 162 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 PRR27Q6MZM9 219 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 FAM231DQ6ZW35 169 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 Q8N1X5 172 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 NHLRC2Q8NBF2 726 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 OR10G8Q8NGN5 311 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 TMEM242Q9NWH2 141 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 MSRB1Q9NZV6 116 aa8.33□□□□□ -1.08
SDC3-204ENST00000487984 XKRY2A2RUG3 117 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 FABP5P3A8MUU1 101 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 K7EN84 100 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 K7EP13 123 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 EREGO14944 169 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 GATCO43716 136 aaKnown RBP8.32□□□□□ -1.08
SDC3-204ENST00000487984 P01737 135 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 EVI2AP22794 236 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 ZNF876PQ49A33 203 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 CFAP126Q5VTH2 177 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 SH2D6Q7Z4S9 175 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 C9orf85Q96MD7 179 aa8.32□□□□□ -1.08
SDC3-204ENST00000487984 RS1O15537 224 aa8.31□□□□□ -1.08
SDC3-204ENST00000487984 CRYGDP07320 174 aa8.31□□□□□ -1.08
SDC3-204ENST00000487984 S100PP25815 95 aa8.31□□□□□ -1.08
SDC3-204ENST00000487984 TIRAPP58753 221 aa8.31□□□□□ -1.08
SDC3-204ENST00000487984 RPS20P60866 119 aaKnown RBP8.31□□□□□ -1.08
SDC3-204ENST00000487984 SLC25A29Q8N8R3 303 aa8.31□□□□□ -1.08
SDC3-204ENST00000487984 ZC2HC1AQ96GY0 325 aa8.31□□□□□ -1.08
SDC3-204ENST00000487984 SCRT2Q9NQ03 307 aa8.31□□□□□ -1.08
SDC3-204ENST00000487984 SMCO4Q9NRQ5 59 aa8.31□□□□□ -1.08
SDC3-204ENST00000487984 PGPEP1Q9NXJ5 209 aa8.31□□□□□ -1.08
SDC3-204ENST00000487984 A0A087WTM6 91 aa8.3□□□□□ -1.08
SDC3-204ENST00000487984 IGHV3-73A0A0B4J1V6 119 aa8.3□□□□□ -1.08
SDC3-204ENST00000487984 RNASE3P12724 160 aaKnown RBP8.3□□□□□ -1.08
SDC3-204ENST00000487984 RPL19P84098 196 aaKnown RBP8.3□□□□□ -1.08
SDC3-204ENST00000487984 CT83Q5H943 113 aa8.3□□□□□ -1.08
SDC3-204ENST00000487984 CDPF1Q6NVV7 123 aa8.3□□□□□ -1.08
SDC3-204ENST00000487984 KCNIP4Q6PIL6 250 aa8.3□□□□□ -1.08
SDC3-204ENST00000487984 C10orf126Q8N4M7 172 aa8.3□□□□□ -1.08
SDC3-204ENST00000487984 NUDT10Q8NFP7 164 aa8.3□□□□□ -1.08
SDC3-204ENST00000487984 NUDT11Q96G61 164 aa8.3□□□□□ -1.08
SDC3-204ENST00000487984 TRBV6-4A0A1B0GX49 114 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 C19orf71A6NCJ1 209 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 A8MWL6 223 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 CIDEAO60543 219 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 SH2D1AO60880 128 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 RHOHQ15669 191 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 PTH2Q96A98 100 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 BTF3L4Q96K17 158 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 IMMP2LQ96T52 175 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 PRADC1Q9BSG0 188 aa8.29□□□□□ -1.08
SDC3-204ENST00000487984 RNASE7Q9H1E1 156 aaKnown RBP8.29□□□□□ -1.08
SDC3-204ENST00000487984 RPP21Q9H633 154 aaKnown RBP8.29□□□□□ -1.08
SDC3-204ENST00000487984 IGKV3D-20A0A0C4DH25 116 aa8.28□□□□□ -1.08
SDC3-204ENST00000487984 IGHV3-38A0A0C4DH36 116 aa8.28□□□□□ -1.08
SDC3-204ENST00000487984 LINC01556Q5JQF7 62 aa8.28□□□□□ -1.08
SDC3-204ENST00000487984 ATRAIDQ6UW56 229 aa8.28□□□□□ -1.08
SDC3-204ENST00000487984 OR2D3Q8NGH3 330 aa8.28□□□□□ -1.08
SDC3-204ENST00000487984 FAM231BA6NCW3 169 aa8.27□□□□□ -1.09
SDC3-204ENST00000487984 IL36BQ9NZH7 164 aa8.27□□□□□ -1.09
SDC3-204ENST00000487984 V9GYV3 84 aa8.27□□□□□ -1.09
SDC3-204ENST00000487984 TRAV9-1A0A075B6T8 112 aa8.26□□□□□ -1.09
SDC3-204ENST00000487984 TRAV8-6A0A0B4J262 113 aa8.26□□□□□ -1.09
SDC3-204ENST00000487984 S100A4P26447 101 aaKnown RBP8.26□□□□□ -1.09
SDC3-204ENST00000487984 ASIPP42127 132 aa8.26□□□□□ -1.09
SDC3-204ENST00000487984 CRIP1P50238 77 aa8.26□□□□□ -1.09
SDC3-204ENST00000487984 KRTAP10-1P60331 282 aa8.26□□□□□ -1.09
SDC3-204ENST00000487984 LINC01559Q495D7 138 aa8.26□□□□□ -1.09
SDC3-204ENST00000487984 OR10J3Q5JRS4 329 aa8.26□□□□□ -1.09
SDC3-204ENST00000487984 Q6ZSN1 163 aa8.26□□□□□ -1.09
SDC3-204ENST00000487984 TSKUQ8WUA8 353 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms