RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SLURP1P55000 103 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 GNRH2O43555 120 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 HIST2H2BCQ6DN03 193 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 PRAC2D3DTV9 90 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 IFITM1P13164 125 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 TP73-AS1Q9UF72 201 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 TANC2Q9HCD6 1990 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 GAGE12JA6NER3 117 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 H3BMM0 161 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 IGHG2P01859 326 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 GAGE4Q13068 117 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 NEGR1Q7Z3B1 354 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 Q8N976 141 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 UBE2WQ96B02 151 aa8.5□□□□□ -1.05
HDAC6-228ENST00000486227 SLC25A20O43772 301 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 HCFC1P51610 2035 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 PMVKQ15126 192 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 C11orf71Q6IPW1 123 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 TRPT1Q86TN4 253 aaKnown RBP8.49□□□□□ -1.05
HDAC6-228ENST00000486227 MRPL53Q96EL3 112 aaKnown RBP8.49□□□□□ -1.05
HDAC6-228ENST00000486227 SDHAF1A6NFY7 115 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 TNFRSF13BO14836 293 aaPredicted RBP8.49□□□□□ -1.05
HDAC6-228ENST00000486227 MYCNOSP40205 109 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 TMEM141Q96I45 108 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 ABCA12Q86UK0 2595 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 TRBV6-1A0A0K0K1D8 114 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 FSTL3O95633 263 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 C16orf54Q6UWD8 224 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 TP53TG1Q9Y2A0 90 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 LRRK2Q5S007 2527 aa8.49□□□□□ -1.05
HDAC6-228ENST00000486227 TRBV7-9A0A0J9YWB2 115 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 PLA2G2AP14555 144 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 EML5Q05BV3 1969 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 CHD9Q3L8U1 2897 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 RBAKDNA6NC62 111 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 C20orf78Q9BR46 151 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 TTTY13Q9BZ97 58 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 LENEPQ9Y5L5 61 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 RBMY1BA6NDE4 496 aaKnown RBP8.48□□□□□ -1.05
HDAC6-228ENST00000486227 RBMY1EA6NEQ0 496 aaKnown RBP8.48□□□□□ -1.05
HDAC6-228ENST00000486227 DNAJC9-AS1A6NH13 148 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 TRBV12-3P01733 135 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 RBMY1DP0C7P1 496 aaKnown RBP8.48□□□□□ -1.05
HDAC6-228ENST00000486227 RBMY1A1P0DJD3 496 aaKnown RBP8.48□□□□□ -1.05
HDAC6-228ENST00000486227 RBMY1CP0DJD4 496 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 DEFB1P60022 68 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 MSRB1Q9NZV6 116 aa8.48□□□□□ -1.05
HDAC6-228ENST00000486227 IGHV4-31P0DP07 118 aa8.47□□□□□ -1.05
HDAC6-228ENST00000486227 FGF6P10767 208 aa8.47□□□□□ -1.05
HDAC6-228ENST00000486227 MLST8Q9BVC4 326 aa8.47□□□□□ -1.05
HDAC6-228ENST00000486227 PRRC2AP48634 2157 aaKnown RBP8.47□□□□□ -1.05
HDAC6-228ENST00000486227 TRAV26-1A0A087WT03 109 aa8.47□□□□□ -1.05
HDAC6-228ENST00000486227 B5MCH6 92 aa8.47□□□□□ -1.05
HDAC6-228ENST00000486227 TMEM89A2RUT3 159 aa8.47□□□□□ -1.05
HDAC6-228ENST00000486227 K7EMI3 77 aa8.47□□□□□ -1.05
HDAC6-228ENST00000486227 UNQ9165/PRO28630Q6UXU0 137 aa8.47□□□□□ -1.05
HDAC6-228ENST00000486227 TEN1Q86WV5 123 aa8.47□□□□□ -1.05
HDAC6-228ENST00000486227 TRAV13-1A0A0B4J241 112 aa8.46□□□□□ -1.05
HDAC6-228ENST00000486227 A6NDX4 124 aa8.46□□□□□ -1.05
HDAC6-228ENST00000486227 GATA1P15976 413 aaPredicted RBP8.46□□□□□ -1.05
HDAC6-228ENST00000486227 FOXI1Q12951 378 aa8.46□□□□□ -1.05
HDAC6-228ENST00000486227 SS18Q15532 418 aa8.46□□□□□ -1.05
HDAC6-228ENST00000486227 SPXQ9BT56 116 aa8.46□□□□□ -1.05
HDAC6-228ENST00000486227 COL5A1P20908 1838 aaPredicted RBP8.46□□□□□ -1.05
HDAC6-228ENST00000486227 INAFM1C9JVW0 142 aa8.46□□□□□ -1.05
HDAC6-228ENST00000486227 ODF1Q14990 250 aa8.46□□□□□ -1.05
HDAC6-228ENST00000486227 ZNF493Q6ZR52 646 aa8.46□□□□□ -1.05
HDAC6-228ENST00000486227 PIFOQ8TCI5 191 aa8.46□□□□□ -1.05
HDAC6-228ENST00000486227 IGHV4OR15-8A0A075B7B6 117 aa8.46□□□□□ -1.06
HDAC6-228ENST00000486227 A0A087WW49 117 aa8.46□□□□□ -1.06
HDAC6-228ENST00000486227 LY6LH3BQJ8 138 aa8.46□□□□□ -1.06
HDAC6-228ENST00000486227 CRYGBP07316 175 aa8.46□□□□□ -1.06
HDAC6-228ENST00000486227 MORN3Q6PF18 240 aaPredicted RBP8.46□□□□□ -1.06
HDAC6-228ENST00000486227 LINC00322Q6ZN03 302 aaPredicted RBP8.46□□□□□ -1.06
HDAC6-228ENST00000486227 TIMM21Q9BVV7 248 aa8.46□□□□□ -1.06
HDAC6-228ENST00000486227 SS18L2Q9UHA2 77 aa8.46□□□□□ -1.06
HDAC6-228ENST00000486227 C6orf226Q5I0X4 101 aa8.46□□□□□ -1.06
HDAC6-228ENST00000486227 SPANXDQ9BXN6 97 aa8.46□□□□□ -1.06
HDAC6-228ENST00000486227 LAMA3Q16787 3333 aa8.46□□□□□ -1.06
HDAC6-228ENST00000486227 LINC00158P58513 81 aa8.45□□□□□ -1.06
HDAC6-228ENST00000486227 ATP6V0E2Q8NHE4 81 aa8.45□□□□□ -1.06
HDAC6-228ENST00000486227 CRYBA4P53673 196 aa8.45□□□□□ -1.06
HDAC6-228ENST00000486227 CITED2Q99967 270 aaPredicted RBP8.45□□□□□ -1.06
HDAC6-228ENST00000486227 TRAV8-3A0A0A6YYJ7 113 aa8.45□□□□□ -1.06
HDAC6-228ENST00000486227 PRSS29PA6NIE9 313 aa8.45□□□□□ -1.06
HDAC6-228ENST00000486227 APRG1Q8IVJ8 170 aa8.45□□□□□ -1.06
HDAC6-228ENST00000486227 GHRHP01286 108 aa8.45□□□□□ -1.06
HDAC6-228ENST00000486227 CCDC140Q96MF4 163 aa8.45□□□□□ -1.06
HDAC6-228ENST00000486227 IGHV3-38A0A0C4DH36 116 aa8.44□□□□□ -1.06
HDAC6-228ENST00000486227 C9orf153Q5TBE3 101 aa8.44□□□□□ -1.06
HDAC6-228ENST00000486227 NTN5Q8WTR8 489 aaPredicted RBP8.44□□□□□ -1.06
HDAC6-228ENST00000486227 BRCA2P51587 3418 aa8.44□□□□□ -1.06
HDAC6-228ENST00000486227 J3QQQ9 107 aa8.44□□□□□ -1.06
HDAC6-228ENST00000486227 NPC2P61916 151 aa8.44□□□□□ -1.06
HDAC6-228ENST00000486227 RASL10AQ92737 203 aa8.44□□□□□ -1.06
HDAC6-228ENST00000486227 C11orf68Q9H3H3 251 aaKnown RBP8.44□□□□□ -1.06
HDAC6-228ENST00000486227 PAX4O43316 350 aa8.44□□□□□ -1.06
HDAC6-228ENST00000486227 ZNRF2Q8NHG8 242 aa8.44□□□□□ -1.06
HDAC6-228ENST00000486227 DOPEY1Q5JWR5 2465 aa8.44□□□□□ -1.06
HDAC6-228ENST00000486227 COL4A2P08572 1712 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 258 ms