RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 S100A8P05109 93 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 CRYGDP07320 174 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 MIFP14174 115 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 EVI2AP22794 236 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 RPS10P46783 165 aaKnown RBP5.89□□□□□ -1.47
USP4-210ENST00000483212 SLAQ13239 276 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 ZNF876PQ49A33 203 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 UFSP1Q6NVU6 142 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 LINC00528Q8N1L1 170 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 POM121L12Q8N7R1 296 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 NDUFAF3Q9BU61 184 aa5.89□□□□□ -1.47
USP4-210ENST00000483212 MRPL18Q9H0U6 180 aaKnown RBP5.89□□□□□ -1.47
USP4-210ENST00000483212 MRPL16Q9NX20 251 aaKnown RBP5.89□□□□□ -1.47
USP4-210ENST00000483212 TENM3Q9P273 2699 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 RS1O15537 224 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 TRGC2P03986 189 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 TRGC1P0CF51 173 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 RAB4AP20338 218 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 LGALS9BQ3B8N2 356 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 FAM104BQ5XKR9 115 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 Q6ZTI0 123 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 AMN1Q8IY45 258 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 SYT8Q8NBV8 401 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 AP1S3Q96PC3 154 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 SAMD10Q9BYL1 202 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 KRTAP9-8Q9BYQ0 159 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 NOP10Q9NPE3 64 aaKnown RBP5.88□□□□□ -1.47
USP4-210ENST00000483212 TRAPPC1Q9Y5R8 145 aa5.88□□□□□ -1.47
USP4-210ENST00000483212 TRGV1A0A0A0MS02 117 aa5.87□□□□□ -1.47
USP4-210ENST00000483212 RAB4BP61018 213 aa5.87□□□□□ -1.47
USP4-210ENST00000483212 FABP9Q0Z7S8 132 aa5.87□□□□□ -1.47
USP4-210ENST00000483212 DEFB121Q5J5C9 76 aa5.87□□□□□ -1.47
USP4-210ENST00000483212 CFAP126Q5VTH2 177 aa5.87□□□□□ -1.47
USP4-210ENST00000483212 C14orf178Q8N769 122 aaPredicted RBP5.87□□□□□ -1.47
USP4-210ENST00000483212 MRAPQ8TCY5 172 aa5.87□□□□□ -1.47
USP4-210ENST00000483212 C18orf15Q96N68 181 aa5.87□□□□□ -1.47
USP4-210ENST00000483212 DPH3P1Q9H4G8 78 aa5.87□□□□□ -1.47
USP4-210ENST00000483212 U3KQK5 164 aa5.87□□□□□ -1.47
USP4-210ENST00000483212 A0A087WWL8 130 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 LYRM9A8MSI8 78 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 A8MWV9 139 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 DEFB4AO15263 64 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 GAS8-AS1O95177 125 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 APCSP02743 223 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 EMP1P54849 157 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 KIAA1644Q3SXP7 199 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 MRPL51Q4U2R6 128 aaKnown RBP5.86□□□□□ -1.47
USP4-210ENST00000483212 FAM222AQ5U5X8 452 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 FRZBQ92765 325 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 B9D2Q9BPU9 175 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 SPATA25Q9BR10 227 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 C11orf68Q9H3H3 251 aaKnown RBP5.86□□□□□ -1.47
USP4-210ENST00000483212 DKK2Q9UBU2 259 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 CELA1Q9UNI1 258 aa5.86□□□□□ -1.47
USP4-210ENST00000483212 TRAV4A0A0B4J268 109 aa5.85□□□□□ -1.47
USP4-210ENST00000483212 GAGE12BA1L429 117 aa5.85□□□□□ -1.47
USP4-210ENST00000483212 GAGE7O76087 117 aa5.85□□□□□ -1.47
USP4-210ENST00000483212 GAGE12FP0CL80 117 aa5.85□□□□□ -1.47
USP4-210ENST00000483212 GAGE12GP0CL81 117 aa5.85□□□□□ -1.47
USP4-210ENST00000483212 GAGE12IP0CL82 117 aa5.85□□□□□ -1.47
USP4-210ENST00000483212 Q6ZSN1 163 aa5.85□□□□□ -1.47
USP4-210ENST00000483212 ALKBH7Q9BT30 221 aaPredicted RBP5.85□□□□□ -1.47
USP4-210ENST00000483212 EDA2RQ9HAV5 297 aa5.85□□□□□ -1.47
USP4-210ENST00000483212 TRAV26-2A0A0B4J265 109 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 D6R8Y8 96 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 SMKR1H3BMG3 65 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 RHODO00212 210 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST1H2BKO60814 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 NCR2O95944 276 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST1H2BJP06899 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST1H2BOP23527 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST1H2BBP33778 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST1H2BDP58876 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST1H2BCP62807 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 DEFA6Q01524 100 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST2H2BEQ16778 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.84□□□□□ -1.47
USP4-210ENST00000483212 SUMO4Q6EEV6 95 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 ZFP2Q6ZN57 461 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 SMIM15Q7Z3B0 74 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 NRACQ8N912 160 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST1H2BHQ93079 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 MRAP2Q96G30 205 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 ZNF479Q96JC4 524 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST1H2BNQ99877 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 HIST1H2BMQ99879 126 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 NACAE9PAV3 2078 aa5.84□□□□□ -1.47
USP4-210ENST00000483212 IGHV3-73A0A0B4J1V6 119 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 C1orf196B1AJZ1 125 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 M0QY20 66 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 NPYP01303 97 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 IGHV3-53P01767 116 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 MGPP08493 103 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 SMIM17P0DL12 118 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 GATA1P15976 413 aaPredicted RBP5.83□□□□□ -1.48
USP4-210ENST00000483212 SRIP30626 198 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 FAM74A4Q5TZK3 123 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 OR4C5Q8NGB2 326 aa5.83□□□□□ -1.48
USP4-210ENST00000483212 COL7A1Q02388 2944 aa5.82□□□□□ -1.48
USP4-210ENST00000483212 TRGV2A0A075B6R0 118 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms