RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SAMD10Q9BYL1 202 aa8.65□□□□□ -1.02
SDC1-206ENST00000482879 URGCP-MRPS24S4R325 110 aa8.65□□□□□ -1.02
SDC1-206ENST00000482879 DEFB131BA0A096LNP1 70 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 TRAV10A0A0B4J240 114 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 TRGV4A0A0C4DH28 118 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 F5H768 121 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 CIDEAO60543 219 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 CRYGDP07320 174 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 SMIM17P0DL12 118 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 EVI2AP22794 236 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 S100A1P23297 94 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 FAM74A4Q5TZK3 123 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 SMIM15Q7Z3B0 74 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 BTF3L4Q96K17 158 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 WWC2-AS2Q96NR7 200 aa8.64□□□□□ -1.03
SDC1-206ENST00000482879 A0A1B0GW15 77 aa8.63□□□□□ -1.03
SDC1-206ENST00000482879 RHODO00212 210 aa8.63□□□□□ -1.03
SDC1-206ENST00000482879 HOXA5P20719 270 aa8.63□□□□□ -1.03
SDC1-206ENST00000482879 CAMPP49913 170 aa8.63□□□□□ -1.03
SDC1-206ENST00000482879 FHL2Q14192 279 aa8.63□□□□□ -1.03
SDC1-206ENST00000482879 ZFP2Q6ZN57 461 aa8.63□□□□□ -1.03
SDC1-206ENST00000482879 PHLDA1Q8WV24 401 aaPredicted RBP8.63□□□□□ -1.03
SDC1-206ENST00000482879 TRAV9-1A0A075B6T8 112 aa8.62□□□□□ -1.03
SDC1-206ENST00000482879 HBBP68871 147 aa8.62□□□□□ -1.03
SDC1-206ENST00000482879 UFSP1Q6NVU6 142 aa8.62□□□□□ -1.03
SDC1-206ENST00000482879 ATP5L2Q7Z4Y8 100 aa8.62□□□□□ -1.03
SDC1-206ENST00000482879 DPH3P1Q9H4G8 78 aa8.62□□□□□ -1.03
SDC1-206ENST00000482879 SMCO4Q9NRQ5 59 aa8.62□□□□□ -1.03
SDC1-206ENST00000482879 KIF25-AS1Q9Y6Z4 181 aa8.62□□□□□ -1.03
SDC1-206ENST00000482879 A0A1B0GXF2 115 aa8.61□□□□□ -1.03
SDC1-206ENST00000482879 F5H697 171 aa8.61□□□□□ -1.03
SDC1-206ENST00000482879 S100A8P05109 93 aa8.61□□□□□ -1.03
SDC1-206ENST00000482879 MGPP08493 103 aa8.61□□□□□ -1.03
SDC1-206ENST00000482879 GATA1P15976 413 aaPredicted RBP8.61□□□□□ -1.03
SDC1-206ENST00000482879 SLAQ13239 276 aa8.61□□□□□ -1.03
SDC1-206ENST00000482879 ZNF56Q15929 161 aa8.61□□□□□ -1.03
SDC1-206ENST00000482879 TMEM88Q6PEY1 159 aa8.61□□□□□ -1.03
SDC1-206ENST00000482879 TMEM191AQ9H0A3 160 aa8.61□□□□□ -1.03
SDC1-206ENST00000482879 LINC00315P59091 139 aa8.6□□□□□ -1.03
SDC1-206ENST00000482879 Q6ZSN1 163 aa8.6□□□□□ -1.03
SDC1-206ENST00000482879 CBLN2Q8IUK8 224 aa8.6□□□□□ -1.03
SDC1-206ENST00000482879 MUC7Q8TAX7 377 aa8.6□□□□□ -1.03
SDC1-206ENST00000482879 PRO0255Q9UI72 69 aa8.6□□□□□ -1.03
SDC1-206ENST00000482879 HHLA3Q9XRX5 114 aa8.6□□□□□ -1.03
SDC1-206ENST00000482879 TRAV26-1A0A087WT03 109 aa8.59□□□□□ -1.03
SDC1-206ENST00000482879 TGIF2-C20orf24A0A0A6YYL0 155 aa8.59□□□□□ -1.03
SDC1-206ENST00000482879 A0A0J9YY99 117 aa8.59□□□□□ -1.03
SDC1-206ENST00000482879 PAX4O43316 350 aa8.59□□□□□ -1.03
SDC1-206ENST00000482879 CRYBA4P53673 196 aa8.59□□□□□ -1.03
SDC1-206ENST00000482879 RAB4BP61018 213 aa8.59□□□□□ -1.03
SDC1-206ENST00000482879 ELOBQ15370 118 aa8.59□□□□□ -1.03
SDC1-206ENST00000482879 CEMP1Q6PRD7 247 aaPredicted RBP8.59□□□□□ -1.03
SDC1-206ENST00000482879 TRBV6-4A0A1B0GX49 114 aa8.58□□□□□ -1.04
SDC1-206ENST00000482879 NUPR2A6NF83 97 aa8.58□□□□□ -1.04
SDC1-206ENST00000482879 SCO1O75880 301 aa8.58□□□□□ -1.04
SDC1-206ENST00000482879 ZFAND6Q6FIF0 208 aa8.58□□□□□ -1.04
SDC1-206ENST00000482879 RASL11AQ6T310 242 aa8.58□□□□□ -1.04
SDC1-206ENST00000482879 AMN1Q8IY45 258 aa8.58□□□□□ -1.04
SDC1-206ENST00000482879 SLC25A29Q8N8R3 303 aa8.58□□□□□ -1.04
SDC1-206ENST00000482879 GATD1Q8NB37 220 aa8.58□□□□□ -1.04
SDC1-206ENST00000482879 PRADC1Q9BSG0 188 aa8.58□□□□□ -1.04
SDC1-206ENST00000482879 TRBV24-1A0A075B6N3 115 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 IGLL5B9A064 214 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 K7EQD1 137 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 RAB4AP20338 218 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 RHOHQ15669 191 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 FAM104BQ5XKR9 115 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 SUMO4Q6EEV6 95 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 RNF185Q96GF1 192 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 VSIG2Q96IQ7 327 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 FAM210BQ96KR6 192 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 YPEL4Q96NS1 127 aa8.57□□□□□ -1.04
SDC1-206ENST00000482879 KLK5Q9Y337 293 aaPredicted RBP8.57□□□□□ -1.04
SDC1-206ENST00000482879 P0DMU3 169 aa8.56□□□□□ -1.04
SDC1-206ENST00000482879 FAM231AP0DMU4 169 aa8.56□□□□□ -1.04
SDC1-206ENST00000482879 FAM231CP0DMU5 169 aa8.56□□□□□ -1.04
SDC1-206ENST00000482879 GYPEP15421 78 aa8.56□□□□□ -1.04
SDC1-206ENST00000482879 COX19Q49B96 90 aa8.56□□□□□ -1.04
SDC1-206ENST00000482879 TMEM136Q6ZRR5 245 aa8.56□□□□□ -1.04
SDC1-206ENST00000482879 TRAV26-2A0A0B4J265 109 aa8.55□□□□□ -1.04
SDC1-206ENST00000482879 LOC100131303A0A0U1RQF7 123 aa8.55□□□□□ -1.04
SDC1-206ENST00000482879 H3BNG1 76 aa8.55□□□□□ -1.04
SDC1-206ENST00000482879 H7C1H1 209 aa8.55□□□□□ -1.04
SDC1-206ENST00000482879 M0QY20 66 aa8.55□□□□□ -1.04
SDC1-206ENST00000482879 MRPL51Q4U2R6 128 aaKnown RBP8.55□□□□□ -1.04
SDC1-206ENST00000482879 GNB1LQ9BYB4 327 aa8.55□□□□□ -1.04
SDC1-206ENST00000482879 Q9UF83 564 aa8.55□□□□□ -1.04
SDC1-206ENST00000482879 DNAH7Q8WXX0 4024 aa8.54□□□□□ -1.04
SDC1-206ENST00000482879 TRBV10-1A0A0K0K1A3 114 aa8.54□□□□□ -1.04
SDC1-206ENST00000482879 NUDT3O95989 172 aa8.54□□□□□ -1.04
SDC1-206ENST00000482879 HLA-DQA1P01909 254 aa8.54□□□□□ -1.04
SDC1-206ENST00000482879 FRZBQ92765 325 aa8.54□□□□□ -1.04
SDC1-206ENST00000482879 MRAP2Q96G30 205 aa8.54□□□□□ -1.04
SDC1-206ENST00000482879 ICOSQ9Y6W8 199 aa8.54□□□□□ -1.04
SDC1-206ENST00000482879 GAGE12JA6NER3 117 aa8.53□□□□□ -1.04
SDC1-206ENST00000482879 SMKR1H3BMG3 65 aa8.53□□□□□ -1.04
SDC1-206ENST00000482879 C3orf84H3BNL1 204 aa8.53□□□□□ -1.04
SDC1-206ENST00000482879 CKS2P33552 79 aa8.53□□□□□ -1.04
SDC1-206ENST00000482879 RPL36AP83881 106 aaKnown RBP8.53□□□□□ -1.04
SDC1-206ENST00000482879 GAGE1Q13065 139 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms