RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SMIM7Q9BQ49 75 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 LINC00467Q9BRT7 94 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 NXT2Q9NPJ8 142 aaKnown RBP2.59□□□□□ -1.99
VPS41-212ENST00000482217 PRR34Q9NV39 138 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 MINOS1-NBL1R4GNA1 71 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 COL4A6Q14031 1691 aa2.59□□□□□ -2
VPS41-212ENST00000482217 RGPD1P0DJD0 1748 aa2.59□□□□□ -2
VPS41-212ENST00000482217 RGPD8O14715 1765 aaPredicted RBP2.59□□□□□ -2
VPS41-212ENST00000482217 RGPD5Q99666 1765 aa2.59□□□□□ -2
VPS41-212ENST00000482217 CDK12Q9NYV4 1490 aaPredicted RBP2.58□□□□□ -2
VPS41-212ENST00000482217 COL27A1Q8IZC6 1860 aaPredicted RBP2.58□□□□□ -2
VPS41-212ENST00000482217 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.58□□□□□ -2
VPS41-212ENST00000482217 DIP2CQ9Y2E4 1556 aa2.58□□□□□ -2
VPS41-212ENST00000482217 MYO3AQ8NEV4 1616 aa2.58□□□□□ -2
VPS41-212ENST00000482217 CLTCQ00610 1675 aaKnown RBP2.58□□□□□ -2
VPS41-212ENST00000482217 TRAV2A0A0B4J234 112 aa2.58□□□□□ -2
VPS41-212ENST00000482217 IGKV3-15P01624 115 aa2.58□□□□□ -2
VPS41-212ENST00000482217 EFNA4P52798 201 aa2.58□□□□□ -2
VPS41-212ENST00000482217 FXYD2P54710 66 aa2.58□□□□□ -2
VPS41-212ENST00000482217 IGFBP7Q16270 282 aa2.58□□□□□ -2
VPS41-212ENST00000482217 SPTSSBQ8NFR3 76 aa2.58□□□□□ -2
VPS41-212ENST00000482217 MUCL1Q96DR8 90 aa2.58□□□□□ -2
VPS41-212ENST00000482217 MGST2Q99735 147 aa2.58□□□□□ -2
VPS41-212ENST00000482217 MRPL35Q9NZE8 188 aaKnown RBP2.58□□□□□ -2
VPS41-212ENST00000482217 TIMM9Q9Y5J7 89 aa2.58□□□□□ -2
VPS41-212ENST00000482217 FAM215AQ9Y5M1 114 aa2.58□□□□□ -2
VPS41-212ENST00000482217 LAMB1P07942 1786 aa2.58□□□□□ -2
VPS41-212ENST00000482217 KIAA1549LQ6ZVL6 1849 aa2.58□□□□□ -2
VPS41-212ENST00000482217 PDCD11Q14690 1871 aaKnown RBP2.58□□□□□ -2
VPS41-212ENST00000482217 BLMP54132 1417 aaPredicted RBP2.58□□□□□ -2
VPS41-212ENST00000482217 EFCAB5A4FU69 1503 aa2.58□□□□□ -2
VPS41-212ENST00000482217 ABCC2Q92887 1545 aa2.58□□□□□ -2
VPS41-212ENST00000482217 MED13Q9UHV7 2174 aa2.57□□□□□ -2
VPS41-212ENST00000482217 SIPA1L3O60292 1781 aaPredicted RBP2.57□□□□□ -2
VPS41-212ENST00000482217 A0A096LNJ9 63 aa2.57□□□□□ -2
VPS41-212ENST00000482217 CRYM-AS1A6NIL9 109 aa2.57□□□□□ -2
VPS41-212ENST00000482217 A8MU10 97 aa2.57□□□□□ -2
VPS41-212ENST00000482217 C17orf112F2Z3M2 114 aa2.57□□□□□ -2
VPS41-212ENST00000482217 H3BPC8 53 aa2.57□□□□□ -2
VPS41-212ENST00000482217 WISP3O95389 354 aaPredicted RBP2.57□□□□□ -2
VPS41-212ENST00000482217 TMEM136Q6ZRR5 245 aa2.57□□□□□ -2
VPS41-212ENST00000482217 RPRMLQ8N4K4 120 aa2.57□□□□□ -2
VPS41-212ENST00000482217 CYB561D1Q8N8Q1 229 aa2.57□□□□□ -2
VPS41-212ENST00000482217 TRGV9Q99603 122 aa2.57□□□□□ -2
VPS41-212ENST00000482217 ADAMTS9Q9P2N4 1935 aa2.57□□□□□ -2
VPS41-212ENST00000482217 ABCA6Q8N139 1617 aa2.57□□□□□ -2
VPS41-212ENST00000482217 COL11A1P12107 1806 aaPredicted RBP2.56□□□□□ -2
VPS41-212ENST00000482217 DOCK11Q5JSL3 2073 aa2.56□□□□□ -2
VPS41-212ENST00000482217 IGHV1-18A0A0C4DH31 117 aa2.56□□□□□ -2
VPS41-212ENST00000482217 NAP1L6A6NFF2 107 aa2.56□□□□□ -2
VPS41-212ENST00000482217 ASAH2BP0C7U1 165 aa2.56□□□□□ -2
VPS41-212ENST00000482217 IGLV3-21P80748 117 aaPredicted RBP2.56□□□□□ -2
VPS41-212ENST00000482217 MPV17LQ2QL34 196 aa2.56□□□□□ -2
VPS41-212ENST00000482217 DEFB116Q30KQ4 102 aa2.56□□□□□ -2
VPS41-212ENST00000482217 DEFB113Q30KQ7 82 aa2.56□□□□□ -2
VPS41-212ENST00000482217 SLC48A1Q6P1K1 146 aa2.56□□□□□ -2
VPS41-212ENST00000482217 LYPD6Q86Y78 171 aa2.56□□□□□ -2
VPS41-212ENST00000482217 Q8NAQ8 132 aa2.56□□□□□ -2
VPS41-212ENST00000482217 NHP2Q9NX24 153 aaKnown RBP2.56□□□□□ -2
VPS41-212ENST00000482217 DUOX2Q9NRD8 1548 aa2.56□□□□□ -2
VPS41-212ENST00000482217 CTTNBP2Q8WZ74 1663 aa2.56□□□□□ -2
VPS41-212ENST00000482217 ESPL1Q14674 2120 aa2.56□□□□□ -2
VPS41-212ENST00000482217 IGKV3D-11A0A0A0MRZ8 115 aa2.55□□□□□ -2
VPS41-212ENST00000482217 A0A0G2JND7 137 aa2.55□□□□□ -2
VPS41-212ENST00000482217 HCG22E2RYF7 251 aa2.55□□□□□ -2
VPS41-212ENST00000482217 H7BZZ5 65 aa2.55□□□□□ -2
VPS41-212ENST00000482217 IGHV3-53P01767 116 aa2.55□□□□□ -2
VPS41-212ENST00000482217 IGKV3-11P04433 115 aa2.55□□□□□ -2
VPS41-212ENST00000482217 IL4P05112 153 aa2.55□□□□□ -2
VPS41-212ENST00000482217 MPV17P39210 176 aa2.55□□□□□ -2
VPS41-212ENST00000482217 KRTDAPP60985 99 aa2.55□□□□□ -2
VPS41-212ENST00000482217 PMCHL1Q16048 86 aa2.55□□□□□ -2
VPS41-212ENST00000482217 LAMA4Q16363 1823 aa2.55□□□□□ -2
VPS41-212ENST00000482217 CFAP126Q5VTH2 177 aa2.55□□□□□ -2
VPS41-212ENST00000482217 Q8TAT8 98 aa2.55□□□□□ -2
VPS41-212ENST00000482217 BPESC1Q9GZL8 116 aa2.55□□□□□ -2
VPS41-212ENST00000482217 ADAMTS7Q9UKP4 1686 aa2.55□□□□□ -2
VPS41-212ENST00000482217 MYOFQ9NZM1 2061 aa2.54□□□□□ -2
VPS41-212ENST00000482217 HEATR5BQ9P2D3 2071 aa2.54□□□□□ -2
VPS41-212ENST00000482217 PLXNC1O60486 1568 aa2.54□□□□□ -2
VPS41-212ENST00000482217 IQGAP2Q13576 1575 aa2.54□□□□□ -2
VPS41-212ENST00000482217 A0A087WWC5 75 aa2.54□□□□□ -2
VPS41-212ENST00000482217 TRBV6-6A0A0A6YYG2 114 aa2.54□□□□□ -2
VPS41-212ENST00000482217 KRTAP10-3P60369 221 aa2.54□□□□□ -2
VPS41-212ENST00000482217 MIR22HGQ0VDD5 57 aa2.54□□□□□ -2
VPS41-212ENST00000482217 ELOBQ15370 118 aa2.54□□□□□ -2
VPS41-212ENST00000482217 ZNF79Q15937 498 aa2.54□□□□□ -2
VPS41-212ENST00000482217 C9orf116Q5BN46 136 aaPredicted RBP2.54□□□□□ -2
VPS41-212ENST00000482217 LCE3CQ5T5A8 94 aa2.54□□□□□ -2
VPS41-212ENST00000482217 CASC2Q6XLA1 102 aa2.54□□□□□ -2
VPS41-212ENST00000482217 CYP2G1PQ6ZSU1 146 aa2.54□□□□□ -2
VPS41-212ENST00000482217 FAM223AQ8IWN6 122 aa2.54□□□□□ -2
VPS41-212ENST00000482217 CMTM2Q8TAZ6 248 aa2.54□□□□□ -2
VPS41-212ENST00000482217 IMMP1LQ96LU5 166 aa2.54□□□□□ -2
VPS41-212ENST00000482217 KIF25-AS1Q9Y6Z4 181 aa2.54□□□□□ -2
VPS41-212ENST00000482217 HEATR1Q9H583 2144 aaKnown RBP2.54□□□□□ -2
VPS41-212ENST00000482217 XRN1Q8IZH2 1706 aaKnown RBP2.54□□□□□ -2
VPS41-212ENST00000482217 TIAM1Q13009 1591 aa2.53□□□□□ -2
VPS41-212ENST00000482217 SAMD9Q5K651 1589 aa2.53□□□□□ -2
VPS41-212ENST00000482217 KIAA0586Q9BVV6 1533 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms