RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 TRBV7-3A0A075B6L6 115 aa4.78□□□□□ -1.64
USP54-213ENST00000481991 SLPIP03973 132 aa4.78□□□□□ -1.64
USP54-213ENST00000481991 TAS2R45P59539 299 aa4.78□□□□□ -1.64
USP54-213ENST00000481991 CNBPP62633 177 aaKnown RBP4.78□□□□□ -1.64
USP54-213ENST00000481991 CACNG7P62955 275 aa4.78□□□□□ -1.64
USP54-213ENST00000481991 NHLH2Q02577 135 aa4.78□□□□□ -1.64
USP54-213ENST00000481991 SMUG1Q53HV7 270 aa4.78□□□□□ -1.64
USP54-213ENST00000481991 KHDC3LQ587J8 217 aa4.78□□□□□ -1.64
USP54-213ENST00000481991 PRSS3P2Q8NHM4 247 aa4.78□□□□□ -1.64
USP54-213ENST00000481991 OR5AC2Q9NZP5 309 aa4.78□□□□□ -1.64
USP54-213ENST00000481991 GRIFINA4D1Z8 144 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 C17orf112F2Z3M2 114 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 K7EQM0 130 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 M0R381 172 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 RHODO00212 210 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 NDUFS6O75380 124 aaKnown RBP4.77□□□□□ -1.65
USP54-213ENST00000481991 NDUFB6O95139 128 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 RPS10P46783 165 aaKnown RBP4.77□□□□□ -1.65
USP54-213ENST00000481991 PKIAP61925 76 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 SRSF9Q13242 221 aaKnown RBP eCLIP4.77□□□□□ -1.65
USP54-213ENST00000481991 Q6ZRP5 223 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 OR11H4Q8NGC9 324 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 PSG8Q9UQ74 426 aa4.77□□□□□ -1.65
USP54-213ENST00000481991 A0A1W2PPV4 95 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 B4DEV8 164 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 H3BMQ9 156 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 H3BVH4 76 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 UBE2D3P61077 147 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 UBE2D2P62837 147 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 RBX1P62877 108 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 REG3AQ06141 175 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 HIGD2BQ4VC39 106 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 UFSP1Q6NVU6 142 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 ZNF664Q8N3J9 261 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 PRR26Q8N8Z3 221 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 OR5C1Q8NGR4 320 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 DERL1Q9BUN8 251 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 PHLDA3Q9Y5J5 127 aa4.76□□□□□ -1.65
USP54-213ENST00000481991 IGKV3OR2-268A0A0C4DH90 116 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 FABP5P3A8MUU1 101 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 F5H697 171 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 HMGB3O15347 200 aaKnown RBP4.75□□□□□ -1.65
USP54-213ENST00000481991 ARMS2P0C7Q2 107 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 TPT1P13693 172 aaKnown RBP4.75□□□□□ -1.65
USP54-213ENST00000481991 SSTP61278 116 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 RAB32Q13637 225 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 ZNF56Q15929 161 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 CFAP161Q6P656 301 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 KRTAP26-1Q6PEX3 210 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 SCGB1C1Q8TD33 95 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 MITD1Q8WV92 249 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 TRIM63Q969Q1 353 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 MRPS26Q9BYN8 205 aaKnown RBP4.75□□□□□ -1.65
USP54-213ENST00000481991 KCNIP2Q9NS61 270 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 PSORS1C2Q9UIG4 136 aa4.75□□□□□ -1.65
USP54-213ENST00000481991 MUC2Q02817 5179 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 TMSB15BA0A087X1C1 80 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 IGKV3D-20A0A0C4DH25 116 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 TRBV10-1A0A0K0K1A3 114 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 CENPXA8MT69 81 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 M0R036 132 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 SULT1A2P50226 295 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 FLI1Q01543 452 aaPredicted RBP4.74□□□□□ -1.65
USP54-213ENST00000481991 TRIQKQ629K1 86 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 SFRP2Q96HF1 295 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 PRR34Q9NV39 138 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 IL36BQ9NZH7 164 aa4.74□□□□□ -1.65
USP54-213ENST00000481991 TRBV25-1A0A075B6N4 114 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 A0A096LNI7 61 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 TRAV8-4A0A0B4J246 113 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 GAGE12HA6NDE8 117 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 NAP1L6A6NFF2 107 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 NOL3O60936 208 aaKnown RBP4.73□□□□□ -1.65
USP54-213ENST00000481991 P01737 135 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 MT-ND6P03923 174 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 S100A5P33763 92 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 DEFA3P59666 94 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 SUMO1P63165 101 aaKnown RBP4.73□□□□□ -1.65
USP54-213ENST00000481991 PIK3CD-AS1Q5SR53 167 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 SAPCD1Q5SSQ6 148 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 NEXN-AS1Q8NBZ9 246 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 WDR61Q9GZS3 305 aaKnown RBP4.73□□□□□ -1.65
USP54-213ENST00000481991 GFRA4Q9GZZ7 299 aa4.73□□□□□ -1.65
USP54-213ENST00000481991 TRAV34A0A0B4J273 112 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 SERTM2A0A1B0GWG4 89 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 A6NHS1 94 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 TSPAN13O95857 204 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 TCRAP04437 139 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 TMEM97Q5BJF2 176 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 NTM-AS1Q6ZSK4 140 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 INO80EQ8NBZ0 244 aaPredicted RBP4.72□□□□□ -1.65
USP54-213ENST00000481991 DEDD2Q8WXF8 326 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 SEC22CQ9BRL7 303 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 C11orf1Q9H5F2 150 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 LINC00474Q9P2X8 69 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 CRCT1Q9UGL9 99 aa4.72□□□□□ -1.65
USP54-213ENST00000481991 IGHV1-24A0A0C4DH33 117 aa4.71□□□□□ -1.66
USP54-213ENST00000481991 GZMBP10144 247 aa4.71□□□□□ -1.66
USP54-213ENST00000481991 RAB4BP61018 213 aa4.71□□□□□ -1.66
USP54-213ENST00000481991 RAB2AP61019 212 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms