RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 IGHV3-30-3P0DP02 117 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 IGHV3-30-5P0DP03 117 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 CRIP1P50238 77 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 UBE2G2P60604 165 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 WFDC2Q14508 124 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 Q6ZSA8 131 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 IL36BQ9NZH7 164 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 TRAV34A0A0B4J273 112 aa8.11□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 FABP5P3A8MUU1 101 aa8.11□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 HAMPP81172 84 aa8.11□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 CST9LP1Q5W188 147 aa8.11□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 SAMD10Q9BYL1 202 aa8.11□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 JPT2Q9H910 190 aa8.11□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 Q9HAA7 133 aa8.11□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 FAM229AH3BQW9 127 aa8.1□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 PEX7O00628 323 aa8.1□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 SULT1A2P50226 295 aa8.1□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 TM2D2Q9BX73 214 aa8.1□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 TRAV1-1A0A0B4J248 108 aa8.09□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 KRBOX1C9JBD0 128 aa8.09□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 S100A9P06702 114 aaKnown RBP8.09□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 UBE2G1P62253 170 aa8.09□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 C9orf62Q8N4C0 152 aa8.09□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 C14orf178Q8N769 122 aaPredicted RBP8.09□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 FMC1Q96HJ9 113 aa8.09□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 MANBALQ9NQG1 85 aa8.09□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 A0A087WWC5 75 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 TRAV8-3A0A0A6YYJ7 113 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 GAGE12JA6NER3 117 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 PAGE4O60829 102 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 ASIPP42127 132 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 GAGE1Q13065 139 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 GAGE4Q13068 117 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 GAGE5Q13069 117 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 GAGE13Q4V321 117 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 DAZ4Q86SG3 579 aaKnown RBP8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 Q86TA4 180 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 ZC2HC1AQ96GY0 325 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 DAZ3Q9NR90 486 aaKnown RBP8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 ZFP30Q9Y2G7 519 aa8.08□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 TRBV6-1A0A0K0K1D8 114 aa8.07□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 ARMS2P0C7Q2 107 aa8.07□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 S100A4P26447 101 aaKnown RBP8.07□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 ZNF674Q2M3X9 581 aa8.07□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 A0A1B0GV50 99 aa8.06□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 A0A1B0GVG6 124 aa8.06□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 B4DEV8 164 aa8.06□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 H3BVH4 76 aa8.06□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 IFNA1P01562 189 aa8.06□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 TAGLN2P37802 199 aaKnown RBP8.06□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 AKR1C3P42330 323 aa8.06□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 NIT1Q86X76 327 aa8.06□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 SFRP2Q96HF1 295 aa8.06□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 RHODO00212 210 aa8.05□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 SH2D1AO60880 128 aa8.05□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 LINC01559Q495D7 138 aa8.05□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 FAM162BQ5T6X4 162 aa8.05□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 ATRAIDQ6UW56 229 aa8.05□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 DNAJC30Q96LL9 226 aa8.05□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 GNG13Q9P2W3 67 aa8.05□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 COX11Q9Y6N1 276 aa8.05□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 LTAP01374 205 aa8.04□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 BLOC1S1P78537 153 aa8.04□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 TOR2AQ5JU69 321 aa8.04□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 TRBV10-1A0A0K0K1A3 114 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 GRIFINA4D1Z8 144 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 M0R036 132 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 LECT2O14960 151 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 PDE6DO43924 150 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 KRTAP10-4P60372 401 aaPredicted RBP8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 UBE2D3P61077 147 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 UBE2D2P62837 147 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 SYT8Q8NBV8 401 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 BAALCQ8WXS3 180 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 CHCHD7Q9BUK0 85 aa8.03□□□□□ -1.12
MSH5-SAPCD1-205ENST00000476085 A0A087WWL8 130 aa8.02□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 SCO2A0A1W2PP80 73 aa8.02□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 CCL20P78556 96 aa8.02□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 MEF2BQ02080 365 aaPredicted RBP8.02□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 ALKAL2Q6UX46 152 aa8.02□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 OR10G8Q8NGN5 311 aa8.02□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 MLST8Q9BVC4 326 aa8.02□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 PHLDA3Q9Y5J5 127 aa8.02□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 TRBV7-3A0A075B6L6 115 aa8.01□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 KRTAP29-1A8MX34 341 aaPredicted RBP8.01□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 FAM74A4Q5TZK3 123 aa8.01□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 PRR27Q6MZM9 219 aa8.01□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 ZFP82Q8N141 532 aa8.01□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 Q8N976 141 aa8.01□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 SSBP4Q9BWG4 385 aaPredicted RBP8.01□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 VAX2Q9UIW0 290 aa8.01□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 KLK12Q9UKR0 248 aa8.01□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 LRP1Q07954 4544 aaKnown RBP8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 IGLV2-33A0A075B6J2 118 aaPredicted RBP8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 PLA2G1BP04054 148 aaKnown RBP8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 BCL2P10415 239 aa8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 NKX2-5P52952 324 aaPredicted RBP8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 LINC01620Q4KN68 170 aa8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 BAGE2Q86Y30 109 aa8□□□□□ -1.13
MSH5-SAPCD1-205ENST00000476085 LINC00528Q8N1L1 170 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms