RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 GTSF1LQ9H1H1 148 aa12.12□□□□□ -0.47
UPF3A-203ENST00000474056 PCLOQ9Y6V0 5065 aa12.12□□□□□ -0.47
UPF3A-203ENST00000474056 RHODO00212 210 aa12.11□□□□□ -0.47
UPF3A-203ENST00000474056 RPL35P42766 123 aaKnown RBP12.11□□□□□ -0.47
UPF3A-203ENST00000474056 LELP1Q5T871 98 aa12.11□□□□□ -0.47
UPF3A-203ENST00000474056 PRR27Q6MZM9 219 aa12.11□□□□□ -0.47
UPF3A-203ENST00000474056 SLC51BQ86UW2 128 aa12.11□□□□□ -0.47
UPF3A-203ENST00000474056 ZFP82Q8N141 532 aa12.11□□□□□ -0.47
UPF3A-203ENST00000474056 C11orf52Q96A22 123 aa12.11□□□□□ -0.47
UPF3A-203ENST00000474056 hCG_2014768A0A024R1R8 64 aa12.1□□□□□ -0.47
UPF3A-203ENST00000474056 A0A087WWL8 130 aa12.1□□□□□ -0.47
UPF3A-203ENST00000474056 TRAV8-6A0A0B4J262 113 aa12.1□□□□□ -0.47
UPF3A-203ENST00000474056 LINC01556Q5JQF7 62 aa12.1□□□□□ -0.47
UPF3A-203ENST00000474056 LCE2DQ5TA82 110 aaPredicted RBP12.1□□□□□ -0.47
UPF3A-203ENST00000474056 KRTAP17-1Q9BYP8 105 aa12.1□□□□□ -0.47
UPF3A-203ENST00000474056 ABCA13Q86UQ4 5058 aa12.09□□□□□ -0.47
UPF3A-203ENST00000474056 TEX46H3BTG2 121 aa12.08□□□□□ -0.48
UPF3A-203ENST00000474056 IGHV3-30P01768 117 aa12.08□□□□□ -0.48
UPF3A-203ENST00000474056 IGHV3-33P01772 117 aa12.08□□□□□ -0.48
UPF3A-203ENST00000474056 CXCL1P09341 107 aa12.08□□□□□ -0.48
UPF3A-203ENST00000474056 IGHV3-30-3P0DP02 117 aa12.08□□□□□ -0.48
UPF3A-203ENST00000474056 IGHV3-30-5P0DP03 117 aa12.08□□□□□ -0.48
UPF3A-203ENST00000474056 ERVFC1-1P60608 527 aa12.08□□□□□ -0.48
UPF3A-203ENST00000474056 AKAP14Q86UN6 197 aa12.08□□□□□ -0.48
UPF3A-203ENST00000474056 OR10AG1Q8NH19 301 aa12.08□□□□□ -0.48
UPF3A-203ENST00000474056 SNAI2O43623 268 aa12.07□□□□□ -0.48
UPF3A-203ENST00000474056 FUSP35637 526 aaKnown RBP eCLIP12.07□□□□□ -0.48
UPF3A-203ENST00000474056 CDK2AP2O75956 126 aa12.06□□□□□ -0.48
UPF3A-203ENST00000474056 MEF2BQ02080 365 aaPredicted RBP12.06□□□□□ -0.48
UPF3A-203ENST00000474056 CENPWQ5EE01 88 aa12.06□□□□□ -0.48
UPF3A-203ENST00000474056 Q8N3U1 123 aa12.06□□□□□ -0.48
UPF3A-203ENST00000474056 C9orf62Q8N4C0 152 aa12.06□□□□□ -0.48
UPF3A-203ENST00000474056 A0A087WTM6 91 aa12.05□□□□□ -0.48
UPF3A-203ENST00000474056 MUC21A0A0G2JKD1 596 aa12.05□□□□□ -0.48
UPF3A-203ENST00000474056 MUC21A0A140T8X8 626 aa12.05□□□□□ -0.48
UPF3A-203ENST00000474056 IBA57-AS1B1ANH7 110 aa12.05□□□□□ -0.48
UPF3A-203ENST00000474056 EREGO14944 169 aa12.05□□□□□ -0.48
UPF3A-203ENST00000474056 IGLV2-8P01709 118 aa12.05□□□□□ -0.48
UPF3A-203ENST00000474056 BOLA1Q9Y3E2 137 aa12.05□□□□□ -0.48
UPF3A-203ENST00000474056 RAB19A4D1S5 217 aa12.04□□□□□ -0.48
UPF3A-203ENST00000474056 IFNA1P01562 189 aa12.04□□□□□ -0.48
UPF3A-203ENST00000474056 BCL2P10415 239 aa12.04□□□□□ -0.48
UPF3A-203ENST00000474056 SSBP4Q9BWG4 385 aaPredicted RBP12.04□□□□□ -0.48
UPF3A-203ENST00000474056 OR5AL1P0C617 328 aa12.03□□□□□ -0.48
UPF3A-203ENST00000474056 Q9HAA7 133 aa12.03□□□□□ -0.48
UPF3A-203ENST00000474056 TRBV20OR9-2A0A075B6H5 130 aa12.02□□□□□ -0.49
UPF3A-203ENST00000474056 PDE6DO43924 150 aa12.02□□□□□ -0.49
UPF3A-203ENST00000474056 SPANXN1Q5VSR9 72 aa12.02□□□□□ -0.49
UPF3A-203ENST00000474056 MED9Q9NWA0 146 aa12.02□□□□□ -0.49
UPF3A-203ENST00000474056 TRBV10-1A0A0K0K1A3 114 aa12.01□□□□□ -0.49
UPF3A-203ENST00000474056 C19orf71A6NCJ1 209 aa12.01□□□□□ -0.49
UPF3A-203ENST00000474056 GZMBP10144 247 aa12.01□□□□□ -0.49
UPF3A-203ENST00000474056 GNG4P50150 75 aa12.01□□□□□ -0.49
UPF3A-203ENST00000474056 SSTP61278 116 aa12.01□□□□□ -0.49
UPF3A-203ENST00000474056 ZNF56Q15929 161 aa12.01□□□□□ -0.49
UPF3A-203ENST00000474056 KRTAP4-5Q9BYR2 181 aa12.01□□□□□ -0.49
UPF3A-203ENST00000474056 PGPEP1Q9NXJ5 209 aa12.01□□□□□ -0.49
UPF3A-203ENST00000474056 A0A087WWC5 75 aa12□□□□□ -0.49
UPF3A-203ENST00000474056 PSCAO43653 123 aa12□□□□□ -0.49
UPF3A-203ENST00000474056 UBE2D3P61077 147 aa12□□□□□ -0.49
UPF3A-203ENST00000474056 UBE2D2P62837 147 aa12□□□□□ -0.49
UPF3A-203ENST00000474056 RPL36AP83881 106 aaKnown RBP12□□□□□ -0.49
UPF3A-203ENST00000474056 LAGE3Q14657 143 aa12□□□□□ -0.49
UPF3A-203ENST00000474056 CDPF1Q6NVV7 123 aa12□□□□□ -0.49
UPF3A-203ENST00000474056 RPL36ALQ969Q0 106 aaKnown RBP12□□□□□ -0.49
UPF3A-203ENST00000474056 DAZAP1Q96EP5 407 aaKnown RBP12□□□□□ -0.49
UPF3A-203ENST00000474056 SMIM12Q96EX1 92 aa12□□□□□ -0.49
UPF3A-203ENST00000474056 VAX2Q9UIW0 290 aa12□□□□□ -0.49
UPF3A-203ENST00000474056 LRCOL1A6NCL2 159 aa11.99□□□□□ -0.49
UPF3A-203ENST00000474056 RBFOX3A6NFN3 312 aa11.99□□□□□ -0.49
UPF3A-203ENST00000474056 RAB4BP61018 213 aa11.99□□□□□ -0.49
UPF3A-203ENST00000474056 ALKAL2Q6UX46 152 aa11.99□□□□□ -0.49
UPF3A-203ENST00000474056 DAZ4Q86SG3 579 aaKnown RBP11.99□□□□□ -0.49
UPF3A-203ENST00000474056 NEXN-AS1Q8NBZ9 246 aa11.99□□□□□ -0.49
UPF3A-203ENST00000474056 OR2D3Q8NGH3 330 aa11.99□□□□□ -0.49
UPF3A-203ENST00000474056 DAZ3Q9NR90 486 aaKnown RBP11.99□□□□□ -0.49
UPF3A-203ENST00000474056 TRBV7-3A0A075B6L6 115 aa11.98□□□□□ -0.49
UPF3A-203ENST00000474056 IGLC6P0CF74 106 aa11.98□□□□□ -0.49
UPF3A-203ENST00000474056 MAPKAPK5-AS1Q8N8E1 139 aa11.98□□□□□ -0.49
UPF3A-203ENST00000474056 OR10G8Q8NGN5 311 aa11.98□□□□□ -0.49
UPF3A-203ENST00000474056 FER1L6-AS1Q8NA97 138 aa11.97□□□□□ -0.49
UPF3A-203ENST00000474056 TPPP3Q9BW30 176 aa11.97□□□□□ -0.49
UPF3A-203ENST00000474056 KIF25-AS1Q9Y6Z4 181 aa11.97□□□□□ -0.49
UPF3A-203ENST00000474056 A0A1B0GVG6 124 aa11.96□□□□□ -0.49
UPF3A-203ENST00000474056 P01737 135 aa11.96□□□□□ -0.49
UPF3A-203ENST00000474056 TAGLN2P37802 199 aaKnown RBP11.96□□□□□ -0.49
UPF3A-203ENST00000474056 NKX2-5P52952 324 aaPredicted RBP11.96□□□□□ -0.49
UPF3A-203ENST00000474056 RPS20P60866 119 aaKnown RBP11.96□□□□□ -0.49
UPF3A-203ENST00000474056 NIT1Q86X76 327 aa11.96□□□□□ -0.49
UPF3A-203ENST00000474056 AP1S3Q96PC3 154 aa11.96□□□□□ -0.49
UPF3A-203ENST00000474056 F5H697 171 aa11.95□□□□□ -0.5
UPF3A-203ENST00000474056 BLOC1S1P78537 153 aa11.95□□□□□ -0.5
UPF3A-203ENST00000474056 SMIM17P0DL12 118 aa11.94□□□□□ -0.5
UPF3A-203ENST00000474056 KRTAP10-1P60331 282 aa11.94□□□□□ -0.5
UPF3A-203ENST00000474056 BIN3Q9NQY0 253 aa11.94□□□□□ -0.5
UPF3A-203ENST00000474056 TRAV8-3A0A0A6YYJ7 113 aa11.93□□□□□ -0.5
UPF3A-203ENST00000474056 K7EN84 100 aa11.93□□□□□ -0.5
UPF3A-203ENST00000474056 NUDT10Q8NFP7 164 aa11.93□□□□□ -0.5
UPF3A-203ENST00000474056 LYPD6BQ8NI32 183 aa11.93□□□□□ -0.5
UPF3A-203ENST00000474056 NUDT11Q96G61 164 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms