RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 TRAPPC2LQ9UL33 140 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 BOKQ9UMX3 212 aaPredicted RBP-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 SLC22A13Q9Y226 551 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 UFC1Q9Y3C8 167 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 ATP6V1DQ9Y5K8 247 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 LINC00312Q9Y6C7 94 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 LY96Q9Y6Y9 160 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 S4R3F8 94 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 NBEAL2Q6ZNJ1 2754 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 GVINP1Q7Z2Y8 2422 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 BTAF1O14981 1849 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 MBD5Q9P267 1494 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 KDM5CP41229 1560 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 SCN7AQ01118 1682 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 RIMS1Q86UR5 1692 aaKnown RBP-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 ADGBQ8N7X0 1667 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 UBR2Q8IWV8 1755 aa-0.62□□□□□ -2.51
SCN1A-205ENST00000473295 PLCE1Q9P212 2302 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 KIAA1107Q9UPP5 1409 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 TRAPPC8Q9Y2L5 1435 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 ARAP2Q8WZ64 1704 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 SRCAPQ6ZRS2 3230 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 MYH1P12882 1939 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 FXYD6-FXYD2A0A087WZ82 144 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 TRBV7-6A0A0J9YX20 115 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 SPAARA0A1B0GVQ0 90 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 LOC730098B7Z3J9 87 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 HSBP1L1C9JCN9 74 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 C17orf112F2Z3M2 114 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 H3BMG7 143 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 K7EP13 123 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 M0QX08 132 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 M0R135 149 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 M0R2P5 195 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 DEGS1O15121 323 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 HMGB3O15347 200 aaKnown RBP-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 YKT6O15498 198 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 ZZEF1O43149 2961 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 CST8O60676 142 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 HIST1H2BKO60814 126 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 EDF1O60869 148 aaKnown RBP-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 HMMRO75330 724 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 PROSCO94903 275 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 DEXIO95424 95 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 IFNA10P01566 189 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 TRACP01848 142 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 MT2AP02795 61 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 HIST1H2BJP06899 126 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 MT1BP07438 61 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 RBP1P09455 135 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 SPINK8P0C7L1 97 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 LINC00694P0DN24 101 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 COX6B1P14854 86 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 G0S2P27469 103 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 GCHFRP30047 84 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 RPL22P35268 128 aaKnown RBP-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 AKR1D1P51857 326 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 GTF2A1P52655 376 aaPredicted RBP-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 YPEL3P61236 119 aaPredicted RBP-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 MAXP61244 160 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 PSME3P61289 254 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 GNG3P63215 75 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 CAV1Q03135 178 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 FADDQ13158 208 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 ITGB3BPQ13352 177 aaPredicted RBP-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 OR8B8Q15620 311 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 HIST3H3Q16695 136 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 RTL8BQ17RB0 113 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 HSD17B12Q53GQ0 312 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 TMEM97Q5BJF2 176 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 Q6AWC8 147 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 C3orf33Q6P1S2 294 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 KRT222Q8N1A0 295 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 C9orf62Q8N4C0 152 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 Q8N8P6 123 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 TEX47Q8TBZ9 253 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 BRK1Q8WUW1 75 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 C9orf16Q9BUW7 83 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 RTL8AQ9BWD3 113 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 MRPS26Q9BYN8 205 aaKnown RBP-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 BIN3Q9NQY0 253 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 BATF3Q9NR55 127 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 ARHGEF10O15013 1369 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 PTPN13Q12923 2485 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 RIF1Q5UIP0 2472 aaKnown RBP-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 C5orf42Q9H799 3197 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 RELNP78509 3460 aa-0.63□□□□□ -2.51
SCN1A-205ENST00000473295 C9orf84Q5VXU9 1444 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 WNK3Q9BYP7 1800 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 MYO7AQ13402 2215 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 SPAG17Q6Q759 2223 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 TRRAPQ9Y4A5 3859 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 KIF21AQ7Z4S6 1674 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 PBRM1Q86U86 1689 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 ERCC6L2Q5T890 1561 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 ADGRL2O95490 1459 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 GAPVD1Q14C86 1478 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 NLRP1Q9C000 1473 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 MED23Q9ULK4 1368 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 TRGV10A0A0A0MS01 117 aa-0.64□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms