RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 LINC00315P59091 139 aa13.71□□□□□ -0.21
SMARCD3-209ENST00000472988 LGALS9BQ3B8N2 356 aa13.71□□□□□ -0.21
SMARCD3-209ENST00000472988 MGPP08493 103 aa13.7□□□□□ -0.22
SMARCD3-209ENST00000472988 FAM74A4Q5TZK3 123 aa13.7□□□□□ -0.22
SMARCD3-209ENST00000472988 MRAPQ8TCY5 172 aa13.7□□□□□ -0.22
SMARCD3-209ENST00000472988 NDUFAF3Q9BU61 184 aa13.7□□□□□ -0.22
SMARCD3-209ENST00000472988 A8MWV9 139 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST1H2BKO60814 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST1H2BJP06899 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 SMIM17P0DL12 118 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST1H2BOP23527 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST1H2BBP33778 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST1H2BDP58876 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST1H2BCP62807 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST2H2BEQ16778 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 POM121L12Q8N7R1 296 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST1H2BHQ93079 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST1H2BNQ99877 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 HIST1H2BMQ99879 126 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 GAS8-AS1O95177 125 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 SRIP30626 198 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 RAB5BP61020 215 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 CFAP126Q5VTH2 177 aa13.69□□□□□ -0.22
SMARCD3-209ENST00000472988 TRAV26-2A0A0B4J265 109 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 GAGE12BA1L429 117 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 D6R8Y8 96 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 SMKR1H3BMG3 65 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 RS1O15537 224 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 GAGE7O76087 117 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 NCR2O95944 276 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 GAGE12FP0CL80 117 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 GAGE12GP0CL81 117 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 GAGE12IP0CL82 117 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 UFSP1Q6NVU6 142 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 TM2D3Q9BRN9 247 aa13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 ALKBH7Q9BT30 221 aaPredicted RBP13.68□□□□□ -0.22
SMARCD3-209ENST00000472988 FAM222AQ5U5X8 452 aa13.67□□□□□ -0.22
SMARCD3-209ENST00000472988 LINC00612Q8N6U2 182 aa13.67□□□□□ -0.22
SMARCD3-209ENST00000472988 U3KQK5 164 aa13.67□□□□□ -0.22
SMARCD3-209ENST00000472988 IGHV3-73A0A0B4J1V6 119 aa13.66□□□□□ -0.22
SMARCD3-209ENST00000472988 ORMDL3Q8N138 153 aa13.66□□□□□ -0.22
SMARCD3-209ENST00000472988 SPATA25Q9BR10 227 aa13.66□□□□□ -0.22
SMARCD3-209ENST00000472988 DKK2Q9UBU2 259 aa13.66□□□□□ -0.22
SMARCD3-209ENST00000472988 GATA1P15976 413 aaPredicted RBP13.65□□□□□ -0.22
SMARCD3-209ENST00000472988 CKS2P33552 79 aa13.65□□□□□ -0.22
SMARCD3-209ENST00000472988 ZNF56Q15929 161 aa13.65□□□□□ -0.22
SMARCD3-209ENST00000472988 SUMO4Q6EEV6 95 aa13.65□□□□□ -0.22
SMARCD3-209ENST00000472988 MRAP2Q96G30 205 aa13.65□□□□□ -0.22
SMARCD3-209ENST00000472988 CELA1Q9UNI1 258 aa13.65□□□□□ -0.22
SMARCD3-209ENST00000472988 TRAV4A0A0B4J268 109 aa13.64□□□□□ -0.23
SMARCD3-209ENST00000472988 LYRM9A8MSI8 78 aa13.64□□□□□ -0.23
SMARCD3-209ENST00000472988 OR4C5Q8NGB2 326 aa13.64□□□□□ -0.23
SMARCD3-209ENST00000472988 ZNF479Q96JC4 524 aa13.64□□□□□ -0.23
SMARCD3-209ENST00000472988 TENM3Q9P273 2699 aa13.64□□□□□ -0.23
SMARCD3-209ENST00000472988 TRGV2A0A075B6R0 118 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 F5H697 171 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 RHODO00212 210 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 IGHV3-53P01767 116 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 DEFB130BP0DP73 79 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 DEFB130AP0DP74 79 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 PRELID3AQ96N28 172 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 NPYP01303 97 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 PPBPP02775 128 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 C18orf32Q8TCD1 76 aa13.63□□□□□ -0.23
SMARCD3-209ENST00000472988 IQCJQ1A5X6 159 aa13.62□□□□□ -0.23
SMARCD3-209ENST00000472988 Q6ZSN1 163 aa13.62□□□□□ -0.23
SMARCD3-209ENST00000472988 NRACQ8N912 160 aa13.62□□□□□ -0.23
SMARCD3-209ENST00000472988 C18orf15Q96N68 181 aa13.62□□□□□ -0.23
SMARCD3-209ENST00000472988 C11orf68Q9H3H3 251 aaKnown RBP13.62□□□□□ -0.23
SMARCD3-209ENST00000472988 ZFP2Q6ZN57 461 aa13.61□□□□□ -0.23
SMARCD3-209ENST00000472988 RPL39LQ96EH5 51 aaKnown RBP13.61□□□□□ -0.23
SMARCD3-209ENST00000472988 B9D2Q9BPU9 175 aa13.6□□□□□ -0.23
SMARCD3-209ENST00000472988 M0QY20 66 aa13.59□□□□□ -0.23
SMARCD3-209ENST00000472988 TNFRSF6BO95407 300 aa13.59□□□□□ -0.23
SMARCD3-209ENST00000472988 SPART-AS1P0CW21 52 aa13.59□□□□□ -0.23
SMARCD3-209ENST00000472988 DEFA6Q01524 100 aa13.59□□□□□ -0.23
SMARCD3-209ENST00000472988 NDUFA6P56556 154 aa13.59□□□□□ -0.23
SMARCD3-209ENST00000472988 Q0VG73 95 aa13.59□□□□□ -0.23
SMARCD3-209ENST00000472988 OR10J3Q5JRS4 329 aa13.59□□□□□ -0.23
SMARCD3-209ENST00000472988 LAMTOR2Q9Y2Q5 125 aa13.59□□□□□ -0.23
SMARCD3-209ENST00000472988 A0A0J9YWU9 116 aa13.58□□□□□ -0.24
SMARCD3-209ENST00000472988 EDA2RQ9HAV5 297 aa13.58□□□□□ -0.24
SMARCD3-209ENST00000472988 HUWE1Q7Z6Z7 4374 aaKnown RBP13.57□□□□□ -0.24
SMARCD3-209ENST00000472988 P0DMU3 169 aa13.56□□□□□ -0.24
SMARCD3-209ENST00000472988 FAM231AP0DMU4 169 aa13.56□□□□□ -0.24
SMARCD3-209ENST00000472988 FAM231CP0DMU5 169 aa13.56□□□□□ -0.24
SMARCD3-209ENST00000472988 LINC00310P59036 64 aa13.56□□□□□ -0.24
SMARCD3-209ENST00000472988 DAD1P61803 113 aa13.56□□□□□ -0.24
SMARCD3-209ENST00000472988 ZMAT4Q9H898 229 aa13.56□□□□□ -0.24
SMARCD3-209ENST00000472988 FHL2Q14192 279 aa13.56□□□□□ -0.24
SMARCD3-209ENST00000472988 COA6Q5JTJ3 125 aaKnown RBP13.56□□□□□ -0.24
SMARCD3-209ENST00000472988 Q9UF83 564 aa13.56□□□□□ -0.24
SMARCD3-209ENST00000472988 LOC389332A0A1B0GUA5 103 aa13.55□□□□□ -0.24
SMARCD3-209ENST00000472988 TEX48A0A1B0GUV7 120 aa13.55□□□□□ -0.24
SMARCD3-209ENST00000472988 CIDEAO60543 219 aa13.55□□□□□ -0.24
SMARCD3-209ENST00000472988 BAGE3Q86Y29 109 aa13.55□□□□□ -0.24
SMARCD3-209ENST00000472988 URB1-AS1Q96HZ7 61 aa13.55□□□□□ -0.24
SMARCD3-209ENST00000472988 H7C1H1 209 aa13.54□□□□□ -0.24
SMARCD3-209ENST00000472988 S100A6P06703 90 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms