RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TPT1P13693 172 aaKnown RBP10.55□□□□□ -0.72
CCDC88B-205ENST00000472524 LINC01559Q495D7 138 aa10.55□□□□□ -0.72
CCDC88B-205ENST00000472524 UFSP1Q6NVU6 142 aa10.55□□□□□ -0.72
CCDC88B-205ENST00000472524 MBD3L1Q8WWY6 194 aa10.55□□□□□ -0.72
CCDC88B-205ENST00000472524 Q9UF83 564 aa10.55□□□□□ -0.72
CCDC88B-205ENST00000472524 BOLA1Q9Y3E2 137 aa10.55□□□□□ -0.72
CCDC88B-205ENST00000472524 A0A087WWL8 130 aa10.54□□□□□ -0.72
CCDC88B-205ENST00000472524 SCO2A0A1W2PP80 73 aa10.54□□□□□ -0.72
CCDC88B-205ENST00000472524 RHODO00212 210 aa10.54□□□□□ -0.72
CCDC88B-205ENST00000472524 PFDN1O60925 122 aa10.54□□□□□ -0.72
CCDC88B-205ENST00000472524 LINC00694P0DN24 101 aa10.54□□□□□ -0.72
CCDC88B-205ENST00000472524 XGP55808 180 aa10.54□□□□□ -0.72
CCDC88B-205ENST00000472524 Q8N3U1 123 aa10.54□□□□□ -0.72
CCDC88B-205ENST00000472524 H2AFB1P0C5Y9 115 aa10.52□□□□□ -0.73
CCDC88B-205ENST00000472524 KRTAP10-1P60331 282 aa10.52□□□□□ -0.73
CCDC88B-205ENST00000472524 EIF5AP63241 154 aaKnown RBP10.52□□□□□ -0.73
CCDC88B-205ENST00000472524 RPL19P84098 196 aaKnown RBP10.52□□□□□ -0.73
CCDC88B-205ENST00000472524 TMUB2Q71RG4 321 aa10.52□□□□□ -0.73
CCDC88B-205ENST00000472524 ZFP82Q8N141 532 aa10.52□□□□□ -0.73
CCDC88B-205ENST00000472524 SFRP2Q96HF1 295 aa10.52□□□□□ -0.73
CCDC88B-205ENST00000472524 LRCOL1A6NCL2 159 aa10.51□□□□□ -0.73
CCDC88B-205ENST00000472524 S100A9P06702 114 aaKnown RBP10.51□□□□□ -0.73
CCDC88B-205ENST00000472524 INAFM2P0DMQ5 153 aa10.51□□□□□ -0.73
CCDC88B-205ENST00000472524 GCSHP23434 173 aa10.5□□□□□ -0.73
CCDC88B-205ENST00000472524 PRR27Q6MZM9 219 aa10.5□□□□□ -0.73
CCDC88B-205ENST00000472524 BAGE2Q86Y30 109 aa10.5□□□□□ -0.73
CCDC88B-205ENST00000472524 A0A087WWC5 75 aa10.49□□□□□ -0.73
CCDC88B-205ENST00000472524 IGLV5-52A0A0A0MRZ9 124 aa10.49□□□□□ -0.73
CCDC88B-205ENST00000472524 LAGE3Q14657 143 aa10.49□□□□□ -0.73
CCDC88B-205ENST00000472524 Q5VSD8 79 aa10.49□□□□□ -0.73
CCDC88B-205ENST00000472524 DAZ4Q86SG3 579 aaKnown RBP10.49□□□□□ -0.73
CCDC88B-205ENST00000472524 DAZ3Q9NR90 486 aaKnown RBP10.49□□□□□ -0.73
CCDC88B-205ENST00000472524 OR10AG1Q8NH19 301 aa10.48□□□□□ -0.73
CCDC88B-205ENST00000472524 MLST8Q9BVC4 326 aa10.48□□□□□ -0.73
CCDC88B-205ENST00000472524 GNG13Q9P2W3 67 aa10.48□□□□□ -0.73
CCDC88B-205ENST00000472524 DNAH8Q96JB1 4490 aa10.48□□□□□ -0.73
CCDC88B-205ENST00000472524 Q8N814 137 aa10.47□□□□□ -0.73
CCDC88B-205ENST00000472524 TM2D2Q9BX73 214 aa10.47□□□□□ -0.73
CCDC88B-205ENST00000472524 MUC21A0A0G2JKD1 596 aa10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 MUC21A0A140T8X8 626 aa10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 CXCL1P09341 107 aa10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 RPL35P42766 123 aaKnown RBP10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 CCL20P78556 96 aa10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 RPL36AP83881 106 aaKnown RBP10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 ZNF56Q15929 161 aa10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 NTN5Q8WTR8 489 aaPredicted RBP10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 RPL36ALQ969Q0 106 aaKnown RBP10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 MANBALQ9NQG1 85 aa10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 URGCP-MRPS24S4R325 110 aa10.46□□□□□ -0.73
CCDC88B-205ENST00000472524 DMBT1Q9UGM3 2413 aaPredicted RBP10.46□□□□□ -0.74
CCDC88B-205ENST00000472524 MYCBP2O75592 4640 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 VPS13BQ7Z7G8 4022 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 TRAV8-3A0A0A6YYJ7 113 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 TRBV10-1A0A0K0K1A3 114 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 SMR3BP02814 79 aaPredicted RBP10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 SSTP61278 116 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 HAMPP81172 84 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 WFDC2Q14508 124 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 TOR2AQ5JU69 321 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 SPANXN1Q5VSR9 72 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 FRZBQ92765 325 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 DERL1Q9BUN8 251 aa10.45□□□□□ -0.74
CCDC88B-205ENST00000472524 TRBV7-3A0A075B6L6 115 aa10.44□□□□□ -0.74
CCDC88B-205ENST00000472524 LECT2O14960 151 aa10.44□□□□□ -0.74
CCDC88B-205ENST00000472524 SNAI2O43623 268 aa10.44□□□□□ -0.74
CCDC88B-205ENST00000472524 UBE2D3P61077 147 aa10.44□□□□□ -0.74
CCDC88B-205ENST00000472524 UBE2D2P62837 147 aa10.44□□□□□ -0.74
CCDC88B-205ENST00000472524 NIT1Q86X76 327 aa10.44□□□□□ -0.74
CCDC88B-205ENST00000472524 RAB5CP51148 216 aa10.43□□□□□ -0.74
CCDC88B-205ENST00000472524 RAB4BP61018 213 aa10.43□□□□□ -0.74
CCDC88B-205ENST00000472524 CENPWQ5EE01 88 aa10.43□□□□□ -0.74
CCDC88B-205ENST00000472524 EIF5AL1Q6IS14 154 aaKnown RBP10.43□□□□□ -0.74
CCDC88B-205ENST00000472524 C11orf52Q96A22 123 aa10.43□□□□□ -0.74
CCDC88B-205ENST00000472524 KLK12Q9UKR0 248 aa10.43□□□□□ -0.74
CCDC88B-205ENST00000472524 A0A087WX48 190 aa10.42□□□□□ -0.74
CCDC88B-205ENST00000472524 TRAV1-1A0A0B4J248 108 aa10.42□□□□□ -0.74
CCDC88B-205ENST00000472524 TEX46H3BTG2 121 aa10.42□□□□□ -0.74
CCDC88B-205ENST00000472524 OR5AL1P0C617 328 aa10.42□□□□□ -0.74
CCDC88B-205ENST00000472524 SULT1A2P50226 295 aa10.42□□□□□ -0.74
CCDC88B-205ENST00000472524 KCNIP4Q6PIL6 250 aa10.42□□□□□ -0.74
CCDC88B-205ENST00000472524 NEXN-AS1Q8NBZ9 246 aa10.42□□□□□ -0.74
CCDC88B-205ENST00000472524 DNAJC30Q96LL9 226 aa10.42□□□□□ -0.74
CCDC88B-205ENST00000472524 SSBP4Q9BWG4 385 aaPredicted RBP10.42□□□□□ -0.74
CCDC88B-205ENST00000472524 IGKV2D-24A0A075B6R9 120 aa10.41□□□□□ -0.74
CCDC88B-205ENST00000472524 F5H697 171 aa10.41□□□□□ -0.74
CCDC88B-205ENST00000472524 OR10G8Q8NGN5 311 aa10.41□□□□□ -0.74
CCDC88B-205ENST00000472524 TPPP3Q9BW30 176 aa10.41□□□□□ -0.74
CCDC88B-205ENST00000472524 SRRM2Q9UQ35 2752 aaKnown RBP10.41□□□□□ -0.74
CCDC88B-205ENST00000472524 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 RAB19A4D1S5 217 aa10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 SMIM17P0DL12 118 aa10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 GZMBP10144 247 aa10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 TCTE3Q8IZS6 198 aa10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 BAALCQ8WXS3 180 aa10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 UBE2WQ96B02 151 aa10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 RMI2Q96E14 147 aa10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 DAZAP1Q96EP5 407 aaKnown RBP10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 AP1S3Q96PC3 154 aa10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 TMEM70Q9BUB7 260 aa10.4□□□□□ -0.74
CCDC88B-205ENST00000472524 RBFOX3A6NFN3 312 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms