RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 KIF25-AS1Q9Y6Z4 181 aa11.6□□□□□ -0.55
SHH-205ENST00000472308 A0A0J9YXV3 536 aa11.59□□□□□ -0.55
SHH-205ENST00000472308 TRBV10-1A0A0K0K1A3 114 aa11.59□□□□□ -0.55
SHH-205ENST00000472308 LRRC37A5PQ49AS3 106 aa11.59□□□□□ -0.55
SHH-205ENST00000472308 RNF185Q96GF1 192 aa11.59□□□□□ -0.55
SHH-205ENST00000472308 KRTAP9-2Q9BYQ4 174 aa11.59□□□□□ -0.55
SHH-205ENST00000472308 PRR34Q9NV39 138 aa11.59□□□□□ -0.55
SHH-205ENST00000472308 SIX6O95475 246 aa11.58□□□□□ -0.56
SHH-205ENST00000472308 RAB2AP61019 212 aa11.58□□□□□ -0.56
SHH-205ENST00000472308 PLAC8Q9NZF1 115 aa11.58□□□□□ -0.56
SHH-205ENST00000472308 TRBV7-3A0A075B6L6 115 aa11.57□□□□□ -0.56
SHH-205ENST00000472308 SLPIP03973 132 aa11.57□□□□□ -0.56
SHH-205ENST00000472308 H2AFB2P0C5Z0 115 aa11.57□□□□□ -0.56
SHH-205ENST00000472308 ARL14EPLP0DKL9 152 aa11.57□□□□□ -0.56
SHH-205ENST00000472308 RPL36AP83881 106 aaKnown RBP11.57□□□□□ -0.56
SHH-205ENST00000472308 CLPSL2Q6UWE3 100 aa11.57□□□□□ -0.56
SHH-205ENST00000472308 RPL36ALQ969Q0 106 aaKnown RBP11.57□□□□□ -0.56
SHH-205ENST00000472308 SFRP2Q96HF1 295 aa11.57□□□□□ -0.56
SHH-205ENST00000472308 CCDC160A6NGH7 325 aa11.56□□□□□ -0.56
SHH-205ENST00000472308 K7EQM0 130 aa11.56□□□□□ -0.56
SHH-205ENST00000472308 WDR73Q6P4I2 378 aa11.56□□□□□ -0.56
SHH-205ENST00000472308 CLRN3Q8NCR9 226 aa11.56□□□□□ -0.56
SHH-205ENST00000472308 OR10G8Q8NGN5 311 aa11.56□□□□□ -0.56
SHH-205ENST00000472308 RBM38Q9H0Z9 239 aaKnown RBP11.56□□□□□ -0.56
SHH-205ENST00000472308 IGHV3-64A0A075B6Q5 118 aa11.55□□□□□ -0.56
SHH-205ENST00000472308 A0A1W2PPV4 95 aa11.55□□□□□ -0.56
SHH-205ENST00000472308 ARMS2P0C7Q2 107 aa11.55□□□□□ -0.56
SHH-205ENST00000472308 PRR3P79522 188 aaKnown RBP11.55□□□□□ -0.56
SHH-205ENST00000472308 OR11H4Q8NGC9 324 aa11.55□□□□□ -0.56
SHH-205ENST00000472308 DPH3Q96FX2 82 aa11.55□□□□□ -0.56
SHH-205ENST00000472308 SMIM3Q9BZL3 60 aa11.55□□□□□ -0.56
SHH-205ENST00000472308 HSPB11Q9Y547 144 aa11.55□□□□□ -0.56
SHH-205ENST00000472308 B4DEV8 164 aa11.54□□□□□ -0.56
SHH-205ENST00000472308 PTTG1O95997 202 aa11.54□□□□□ -0.56
SHH-205ENST00000472308 SAPCD1Q5SSQ6 148 aa11.54□□□□□ -0.56
SHH-205ENST00000472308 DNLZQ5SXM8 178 aa11.54□□□□□ -0.56
SHH-205ENST00000472308 SUN5Q8TC36 379 aa11.54□□□□□ -0.56
SHH-205ENST00000472308 SCGB1C1Q8TD33 95 aa11.54□□□□□ -0.56
SHH-205ENST00000472308 EPDR1Q9UM22 224 aa11.54□□□□□ -0.56
SHH-205ENST00000472308 hDV102S1A0JD36 115 aa11.53□□□□□ -0.56
SHH-205ENST00000472308 LINC00269Q8N2A0 174 aa11.53□□□□□ -0.56
SHH-205ENST00000472308 C7orf33Q8WU49 177 aa11.53□□□□□ -0.56
SHH-205ENST00000472308 CHCHD5Q9BSY4 110 aa11.53□□□□□ -0.56
SHH-205ENST00000472308 WFDC1Q9HC57 220 aa11.53□□□□□ -0.56
SHH-205ENST00000472308 FABP5P3A8MUU1 101 aa11.52□□□□□ -0.57
SHH-205ENST00000472308 KRBOX1C9JBD0 128 aa11.52□□□□□ -0.57
SHH-205ENST00000472308 RBX1P62877 108 aa11.52□□□□□ -0.57
SHH-205ENST00000472308 SUMO1P63165 101 aaKnown RBP11.52□□□□□ -0.57
SHH-205ENST00000472308 NEXN-AS1Q8NBZ9 246 aa11.52□□□□□ -0.57
SHH-205ENST00000472308 ARL2-SNX15V9GYD0 113 aa11.52□□□□□ -0.57
SHH-205ENST00000472308 FAT4Q6V0I7 4981 aa11.52□□□□□ -0.57
SHH-205ENST00000472308 TRAV34A0A0B4J273 112 aa11.51□□□□□ -0.57
SHH-205ENST00000472308 GRIFINA4D1Z8 144 aa11.51□□□□□ -0.57
SHH-205ENST00000472308 M0R381 172 aa11.51□□□□□ -0.57
SHH-205ENST00000472308 STAG3L2P0CL84 134 aa11.51□□□□□ -0.57
SHH-205ENST00000472308 STAG3L3P0CL85 134 aa11.51□□□□□ -0.57
SHH-205ENST00000472308 CRIP1P50238 77 aa11.51□□□□□ -0.57
SHH-205ENST00000472308 NTM-AS1Q6ZSK4 140 aa11.51□□□□□ -0.57
SHH-205ENST00000472308 IGLV10-54A0A075B6I4 117 aa11.5□□□□□ -0.57
SHH-205ENST00000472308 M0R036 132 aa11.5□□□□□ -0.57
SHH-205ENST00000472308 GCHFRP30047 84 aa11.5□□□□□ -0.57
SHH-205ENST00000472308 PKIAP61925 76 aa11.5□□□□□ -0.57
SHH-205ENST00000472308 PHLDA3Q9Y5J5 127 aa11.5□□□□□ -0.57
SHH-205ENST00000472308 CDC34P49427 236 aaPredicted RBP11.49□□□□□ -0.57
SHH-205ENST00000472308 PRR27Q6MZM9 219 aa11.49□□□□□ -0.57
SHH-205ENST00000472308 MUC21A0A0G2JKD1 596 aa11.48□□□□□ -0.57
SHH-205ENST00000472308 PPP1R1CQ8WVI7 109 aa11.48□□□□□ -0.57
SHH-205ENST00000472308 GTSF1Q8WW33 167 aa11.48□□□□□ -0.57
SHH-205ENST00000472308 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.47□□□□□ -0.57
SHH-205ENST00000472308 SH2D1AO60880 128 aa11.47□□□□□ -0.57
SHH-205ENST00000472308 H2BFSP57053 126 aa11.47□□□□□ -0.57
SHH-205ENST00000472308 GAGE6Q13070 117 aa11.47□□□□□ -0.57
SHH-205ENST00000472308 Q86TA4 180 aa11.47□□□□□ -0.57
SHH-205ENST00000472308 ZFP82Q8N141 532 aa11.47□□□□□ -0.57
SHH-205ENST00000472308 RAB24Q969Q5 203 aa11.47□□□□□ -0.57
SHH-205ENST00000472308 TPT1P13693 172 aaKnown RBP11.46□□□□□ -0.57
SHH-205ENST00000472308 RPL12P30050 165 aaKnown RBP11.46□□□□□ -0.57
SHH-205ENST00000472308 RAB4BP61018 213 aa11.46□□□□□ -0.57
SHH-205ENST00000472308 REG3AQ06141 175 aa11.46□□□□□ -0.57
SHH-205ENST00000472308 SPINK6Q6UWN8 80 aa11.46□□□□□ -0.57
SHH-205ENST00000472308 AP5S1Q9NUS5 200 aa11.46□□□□□ -0.57
SHH-205ENST00000472308 FAM240BA0A1B0GVZ2 78 aa11.45□□□□□ -0.58
SHH-205ENST00000472308 CYCSP99999 105 aaKnown RBP11.45□□□□□ -0.58
SHH-205ENST00000472308 COX6A2Q02221 97 aa11.45□□□□□ -0.58
SHH-205ENST00000472308 REG3GQ6UW15 175 aa11.45□□□□□ -0.58
SHH-205ENST00000472308 VAX2Q9UIW0 290 aa11.45□□□□□ -0.58
SHH-205ENST00000472308 TMSB15BA0A087X1C1 80 aa11.44□□□□□ -0.58
SHH-205ENST00000472308 MPC2O95563 127 aa11.44□□□□□ -0.58
SHH-205ENST00000472308 SRSF9Q13242 221 aaKnown RBP eCLIP11.43□□□□□ -0.58
SHH-205ENST00000472308 ZNF56Q15929 161 aa11.43□□□□□ -0.58
SHH-205ENST00000472308 MAJINQ3KP22 176 aa11.43□□□□□ -0.58
SHH-205ENST00000472308 COX8CQ7Z4L0 72 aa11.43□□□□□ -0.58
SHH-205ENST00000472308 C20orf203Q8NBC4 194 aa11.43□□□□□ -0.58
SHH-205ENST00000472308 TMEM167BQ9NRX6 74 aa11.43□□□□□ -0.58
SHH-205ENST00000472308 IGKV2-24A0A0C4DH68 120 aa11.42□□□□□ -0.58
SHH-205ENST00000472308 LINC01559Q495D7 138 aa11.42□□□□□ -0.58
SHH-205ENST00000472308 PRSS3P2Q8NHM4 247 aa11.42□□□□□ -0.58
SHH-205ENST00000472308 LYPD6BQ8NI32 183 aa11.42□□□□□ -0.58
SHH-205ENST00000472308 DERL1Q9BUN8 251 aa11.42□□□□□ -0.58
SHH-205ENST00000472308 GFRA4Q9GZZ7 299 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 151.3 ms