RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SLAQ13239 276 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 FHL2Q14192 279 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 CFAP126Q5VTH2 177 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 DMRTA1Q5VZB9 504 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 FAM231DQ6ZW35 169 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 ZFP82Q8N141 532 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 SSBP4Q9BWG4 385 aaPredicted RBP8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 RNASE7Q9H1E1 156 aaKnown RBP8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 RPP21Q9H633 154 aaKnown RBP8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 PRO0255Q9UI72 69 aa8.25□□□□□ -1.09
SQSTM1-206ENST00000466342 FAT1Q14517 4588 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 A8MWV9 139 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 M0R381 172 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 CIDEAO60543 219 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 NXPH4O95158 308 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 NUDT3O95989 172 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 IGLC6P0CF74 106 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 GZMBP10144 247 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 CRYBA4P53673 196 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 TMEM241Q24JQ0 296 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 C6orf223Q8N319 242 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 VSIG2Q96IQ7 327 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 HHLA3Q9XRX5 114 aa8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 FLG2Q5D862 2391 aaPredicted RBP8.24□□□□□ -1.09
SQSTM1-206ENST00000466342 CCL18P55774 89 aa8.23□□□□□ -1.09
SQSTM1-206ENST00000466342 ERVFC1-1P60608 527 aa8.23□□□□□ -1.09
SQSTM1-206ENST00000466342 FER1L6-AS1Q8NA97 138 aa8.23□□□□□ -1.09
SQSTM1-206ENST00000466342 OR10AG1Q8NH19 301 aa8.23□□□□□ -1.09
SQSTM1-206ENST00000466342 NAT8Q9UHE5 227 aa8.23□□□□□ -1.09
SQSTM1-206ENST00000466342 PAX4O43316 350 aa8.22□□□□□ -1.09
SQSTM1-206ENST00000466342 GATCO43716 136 aaKnown RBP8.22□□□□□ -1.09
SQSTM1-206ENST00000466342 GATA1P15976 413 aaPredicted RBP8.22□□□□□ -1.09
SQSTM1-206ENST00000466342 RPL23P62829 140 aaKnown RBP8.22□□□□□ -1.09
SQSTM1-206ENST00000466342 ZFP2Q6ZN57 461 aa8.22□□□□□ -1.09
SQSTM1-206ENST00000466342 SFRP2Q96HF1 295 aa8.22□□□□□ -1.09
SQSTM1-206ENST00000466342 JPT2Q9H910 190 aa8.22□□□□□ -1.09
SQSTM1-206ENST00000466342 A0A1W2PPQ1 181 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 F2Z2F3 143 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 RHODO00212 210 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 ADIRFQ15847 76 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 CT83Q5H943 113 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 Q5VSD8 79 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 SPANXN1Q5VSR9 72 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 UFSP1Q6NVU6 142 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 ZNRF2Q8NHG8 242 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 FRZBQ92765 325 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 ISOC2Q96AB3 205 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 TPPP3Q9BW30 176 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 SAMD10Q9BYL1 202 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 OSTCQ9NRP0 149 aa8.21□□□□□ -1.1
SQSTM1-206ENST00000466342 A0A096LPF7 62 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 IGHV3-73A0A0B4J1V6 119 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 MUC21A0A0G2JKD1 596 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 NBDYA0A0U1RRE5 68 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 MUC21A0A140T8X8 626 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 TRBV6-4A0A1B0GX49 114 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 A8MWL6 223 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 J3QL48 77 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 CTRLP40313 264 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 KRTAP10-2P60368 255 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 CACNG7P62955 275 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 UQCC3Q6UW78 93 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 C15orf54Q8N8G6 183 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 SLC25A29Q8N8R3 303 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 LINC00588Q9Y4M8 146 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 ICOSQ9Y6W8 199 aa8.2□□□□□ -1.1
SQSTM1-206ENST00000466342 A0A087WWL8 130 aa8.19□□□□□ -1.1
SQSTM1-206ENST00000466342 CRYGDP07320 174 aa8.19□□□□□ -1.1
SQSTM1-206ENST00000466342 RHOHQ15669 191 aa8.19□□□□□ -1.1
SQSTM1-206ENST00000466342 MRPL23Q16540 153 aaKnown RBP8.19□□□□□ -1.1
SQSTM1-206ENST00000466342 FAM74A4Q5TZK3 123 aa8.19□□□□□ -1.1
SQSTM1-206ENST00000466342 LYZL1Q6UWQ5 148 aa8.19□□□□□ -1.1
SQSTM1-206ENST00000466342 GTSF1Q8WW33 167 aa8.19□□□□□ -1.1
SQSTM1-206ENST00000466342 K7EQD1 137 aa8.18□□□□□ -1.1
SQSTM1-206ENST00000466342 GYPEP15421 78 aa8.18□□□□□ -1.1
SQSTM1-206ENST00000466342 SSTP61278 116 aa8.18□□□□□ -1.1
SQSTM1-206ENST00000466342 WDR73Q6P4I2 378 aa8.18□□□□□ -1.1
SQSTM1-206ENST00000466342 AP1S3Q96PC3 154 aa8.18□□□□□ -1.1
SQSTM1-206ENST00000466342 PRADC1Q9BSG0 188 aa8.18□□□□□ -1.1
SQSTM1-206ENST00000466342 CNFNQ9BYD5 112 aa8.18□□□□□ -1.1
SQSTM1-206ENST00000466342 V9GYV3 84 aa8.18□□□□□ -1.1
SQSTM1-206ENST00000466342 LOC100131303A0A0U1RQF7 123 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 LINC00862A6NCI5 91 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 SRIP30626 198 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 FOXA3P55318 350 aaPredicted RBP8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 XGP55808 180 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 COMMD7Q86VX2 200 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 OR10G8Q8NGN5 311 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 TSKUQ8WUA8 353 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 GFRA4Q9GZZ7 299 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 Q9H8V8 135 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 MSRB1Q9NZV6 116 aa8.17□□□□□ -1.1
SQSTM1-206ENST00000466342 FAM231BA6NCW3 169 aa8.16□□□□□ -1.1
SQSTM1-206ENST00000466342 TRGC1P0CF51 173 aa8.16□□□□□ -1.1
SQSTM1-206ENST00000466342 SMIM17P0DL12 118 aa8.16□□□□□ -1.1
SQSTM1-206ENST00000466342 NTF3P20783 257 aa8.16□□□□□ -1.1
SQSTM1-206ENST00000466342 PNRC1Q12796 327 aaPredicted RBP8.16□□□□□ -1.1
SQSTM1-206ENST00000466342 ZNF56Q15929 161 aa8.16□□□□□ -1.1
SQSTM1-206ENST00000466342 ESRGQ1W209 222 aa8.16□□□□□ -1.1
SQSTM1-206ENST00000466342 Q6ZSN1 163 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms