RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 NXT2Q9NPJ8 142 aaKnown RBP13.52□□□□□ -0.24
COL9A3-205ENST00000466192 OR4C5Q8NGB2 326 aa13.51□□□□□ -0.25
COL9A3-205ENST00000466192 hDV102S1A0JD36 115 aa13.51□□□□□ -0.25
COL9A3-205ENST00000466192 LINC01545Q5VT33 79 aa13.51□□□□□ -0.25
COL9A3-205ENST00000466192 DPH3P1Q9H4G8 78 aa13.51□□□□□ -0.25
COL9A3-205ENST00000466192 MAP6D1Q9H9H5 199 aa13.51□□□□□ -0.25
COL9A3-205ENST00000466192 FN1P02751 2386 aaKnown RBP13.5□□□□□ -0.25
COL9A3-205ENST00000466192 ADARB2-AS1A8MUL3 147 aa13.5□□□□□ -0.25
COL9A3-205ENST00000466192 HLA-DRB4P13762 266 aa13.5□□□□□ -0.25
COL9A3-205ENST00000466192 ZNF256Q9Y2P7 627 aaPredicted RBP13.5□□□□□ -0.25
COL9A3-205ENST00000466192 HLA-DRB4X5D2U9 266 aa13.5□□□□□ -0.25
COL9A3-205ENST00000466192 LINC01546A6NGU7 62 aa13.49□□□□□ -0.25
COL9A3-205ENST00000466192 Q8N8P6 123 aa13.49□□□□□ -0.25
COL9A3-205ENST00000466192 MRAP2Q96G30 205 aa13.49□□□□□ -0.25
COL9A3-205ENST00000466192 IGLV2-18A0A075B6J9 118 aa13.49□□□□□ -0.25
COL9A3-205ENST00000466192 H3BMM0 161 aa13.49□□□□□ -0.25
COL9A3-205ENST00000466192 SPAG8Q99932 426 aaPredicted RBP13.49□□□□□ -0.25
COL9A3-205ENST00000466192 A8MTW9 85 aa13.48□□□□□ -0.25
COL9A3-205ENST00000466192 MGPP08493 103 aa13.48□□□□□ -0.25
COL9A3-205ENST00000466192 AP1S3Q96PC3 154 aa13.48□□□□□ -0.25
COL9A3-205ENST00000466192 RBMY1BA6NDE4 496 aaKnown RBP13.48□□□□□ -0.25
COL9A3-205ENST00000466192 RBMY1EA6NEQ0 496 aaKnown RBP13.48□□□□□ -0.25
COL9A3-205ENST00000466192 RBMY1DP0C7P1 496 aaKnown RBP13.48□□□□□ -0.25
COL9A3-205ENST00000466192 IFI27L1Q96BM0 104 aa13.48□□□□□ -0.25
COL9A3-205ENST00000466192 C18orf15Q96N68 181 aa13.48□□□□□ -0.25
COL9A3-205ENST00000466192 C2CD3Q4AC94 2353 aa13.47□□□□□ -0.25
COL9A3-205ENST00000466192 FCER1GP30273 86 aa13.47□□□□□ -0.25
COL9A3-205ENST00000466192 TRAV25A0A0B4J276 109 aa13.47□□□□□ -0.25
COL9A3-205ENST00000466192 NXPH4O95158 308 aa13.47□□□□□ -0.25
COL9A3-205ENST00000466192 KRTAP10-3P60369 221 aa13.47□□□□□ -0.25
COL9A3-205ENST00000466192 NSUN5P1Q3KNT7 163 aa13.47□□□□□ -0.25
COL9A3-205ENST00000466192 Q8N1Y9 231 aa13.47□□□□□ -0.25
COL9A3-205ENST00000466192 MDFICQ9P1T7 246 aa13.47□□□□□ -0.25
COL9A3-205ENST00000466192 PRSS47A8MTI9 375 aa13.46□□□□□ -0.25
COL9A3-205ENST00000466192 HSBP1L1C9JCN9 74 aa13.46□□□□□ -0.25
COL9A3-205ENST00000466192 TMEM158Q8WZ71 300 aa13.46□□□□□ -0.25
COL9A3-205ENST00000466192 RASL10AQ92737 203 aa13.46□□□□□ -0.25
COL9A3-205ENST00000466192 ST20Q9HBF5 79 aa13.46□□□□□ -0.25
COL9A3-205ENST00000466192 IGHV1OR15-1A0A075B7D0 117 aa13.45□□□□□ -0.26
COL9A3-205ENST00000466192 IGHV3-16A0A0C4DH30 117 aa13.45□□□□□ -0.26
COL9A3-205ENST00000466192 RBMY1A1P0DJD3 496 aaKnown RBP13.45□□□□□ -0.26
COL9A3-205ENST00000466192 RBMY1CP0DJD4 496 aa13.45□□□□□ -0.26
COL9A3-205ENST00000466192 RBMY1FQ15415 496 aaKnown RBP13.45□□□□□ -0.26
COL9A3-205ENST00000466192 RNF151Q2KHN1 245 aa13.45□□□□□ -0.26
COL9A3-205ENST00000466192 DEFB125Q8N687 156 aa13.45□□□□□ -0.26
COL9A3-205ENST00000466192 RPL39LQ96EH5 51 aaKnown RBP13.45□□□□□ -0.26
COL9A3-205ENST00000466192 JPT2Q9H910 190 aa13.45□□□□□ -0.26
COL9A3-205ENST00000466192 VAMP3Q15836 100 aa13.45□□□□□ -0.26
COL9A3-205ENST00000466192 ODF3L2Q3SX64 289 aa13.44□□□□□ -0.26
COL9A3-205ENST00000466192 SMIM17P0DL12 118 aa13.44□□□□□ -0.26
COL9A3-205ENST00000466192 LAGE3Q14657 143 aa13.44□□□□□ -0.26
COL9A3-205ENST00000466192 TP73-AS1Q9UF72 201 aa13.44□□□□□ -0.26
COL9A3-205ENST00000466192 SUMO2P61956 95 aaKnown RBP13.43□□□□□ -0.26
COL9A3-205ENST00000466192 C9orf85Q96MD7 179 aa13.43□□□□□ -0.26
COL9A3-205ENST00000466192 SMIM2Q9BVW6 85 aa13.43□□□□□ -0.26
COL9A3-205ENST00000466192 KIF25-AS1Q9Y6Z4 181 aa13.43□□□□□ -0.26
COL9A3-205ENST00000466192 A0A087WWL8 130 aa13.42□□□□□ -0.26
COL9A3-205ENST00000466192 LGALS9BQ3B8N2 356 aa13.42□□□□□ -0.26
COL9A3-205ENST00000466192 LGALS9CQ6DKI2 356 aa13.42□□□□□ -0.26
COL9A3-205ENST00000466192 TAX1BP3O14907 124 aa13.42□□□□□ -0.26
COL9A3-205ENST00000466192 LINC00315P59091 139 aa13.42□□□□□ -0.26
COL9A3-205ENST00000466192 CST9LQ9H4G1 147 aa13.42□□□□□ -0.26
COL9A3-205ENST00000466192 FLNBO75369 2602 aaKnown RBP13.42□□□□□ -0.26
COL9A3-205ENST00000466192 SAP30O75446 220 aa13.41□□□□□ -0.26
COL9A3-205ENST00000466192 HTN1P15515 57 aa13.41□□□□□ -0.26
COL9A3-205ENST00000466192 MPV17L2Q567V2 206 aa13.41□□□□□ -0.26
COL9A3-205ENST00000466192 OCIAD2Q56VL3 154 aa13.41□□□□□ -0.26
COL9A3-205ENST00000466192 JMJD1CQ15652 2540 aa13.4□□□□□ -0.26
COL9A3-205ENST00000466192 C20orf78Q9BR46 151 aa13.4□□□□□ -0.26
COL9A3-205ENST00000466192 CBY3A6NI87 242 aa13.39□□□□□ -0.27
COL9A3-205ENST00000466192 FAM74A4Q5TZK3 123 aa13.39□□□□□ -0.27
COL9A3-205ENST00000466192 POM121L12Q8N7R1 296 aa13.39□□□□□ -0.27
COL9A3-205ENST00000466192 VPS25Q9BRG1 176 aa13.39□□□□□ -0.27
COL9A3-205ENST00000466192 DKK2Q9UBU2 259 aa13.39□□□□□ -0.27
COL9A3-205ENST00000466192 NUDT3O95989 172 aa13.39□□□□□ -0.27
COL9A3-205ENST00000466192 BVES-AS1Q5T3Y7 98 aa13.39□□□□□ -0.27
COL9A3-205ENST00000466192 NDUFA11Q86Y39 141 aa13.39□□□□□ -0.27
COL9A3-205ENST00000466192 F5H697 171 aa13.38□□□□□ -0.27
COL9A3-205ENST00000466192 CRLF1O75462 422 aa13.38□□□□□ -0.27
COL9A3-205ENST00000466192 PRSS1P07477 247 aa13.38□□□□□ -0.27
COL9A3-205ENST00000466192 SYT8Q8NBV8 401 aa13.38□□□□□ -0.27
COL9A3-205ENST00000466192 IGLV1-51P01701 117 aa13.38□□□□□ -0.27
COL9A3-205ENST00000466192 TRGV11A0A075B6L2 103 aa13.37□□□□□ -0.27
COL9A3-205ENST00000466192 OR11H12B2RN74 326 aa13.37□□□□□ -0.27
COL9A3-205ENST00000466192 SUMO4Q6EEV6 95 aa13.37□□□□□ -0.27
COL9A3-205ENST00000466192 C12orf54Q6X4T0 127 aa13.37□□□□□ -0.27
COL9A3-205ENST00000466192 PPP1R17O96001 155 aa13.37□□□□□ -0.27
COL9A3-205ENST00000466192 PRM2P04554 102 aa13.37□□□□□ -0.27
COL9A3-205ENST00000466192 ZNF876PQ49A33 203 aa13.37□□□□□ -0.27
COL9A3-205ENST00000466192 SLC25A34Q6PIV7 304 aa13.37□□□□□ -0.27
COL9A3-205ENST00000466192 CLUHP3Q96NS8 147 aa13.37□□□□□ -0.27
COL9A3-205ENST00000466192 TENM1Q9UKZ4 2725 aa13.36□□□□□ -0.27
COL9A3-205ENST00000466192 TCTAP57738 103 aa13.36□□□□□ -0.27
COL9A3-205ENST00000466192 CSTL1Q9H114 145 aa13.36□□□□□ -0.27
COL9A3-205ENST00000466192 ATP5LO75964 103 aa13.35□□□□□ -0.27
COL9A3-205ENST00000466192 ORMDL2Q53FV1 153 aa13.35□□□□□ -0.27
COL9A3-205ENST00000466192 NEGR1Q7Z3B1 354 aa13.35□□□□□ -0.27
COL9A3-205ENST00000466192 STHQ8IWL8 128 aa13.35□□□□□ -0.27
COL9A3-205ENST00000466192 ODF1Q14990 250 aa13.35□□□□□ -0.27
COL9A3-205ENST00000466192 ERASQ7Z444 233 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms