RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CGB7P0DN87 165 aa14.68□□□□□ -0.06
CCDC88B-204ENST00000463837 DEFB113Q30KQ7 82 aa14.68□□□□□ -0.06
CCDC88B-204ENST00000463837 ZMAT4Q9H898 229 aa14.68□□□□□ -0.06
CCDC88B-204ENST00000463837 TRAV25A0A0B4J276 109 aa14.68□□□□□ -0.06
CCDC88B-204ENST00000463837 H3BT86 120 aa14.68□□□□□ -0.06
CCDC88B-204ENST00000463837 Q8N9W7 124 aa14.68□□□□□ -0.06
CCDC88B-204ENST00000463837 SPRY4Q9C004 299 aa14.67□□□□□ -0.06
CCDC88B-204ENST00000463837 NCKAP5O14513 1909 aa14.67□□□□□ -0.06
CCDC88B-204ENST00000463837 PRAC2D3DTV9 90 aa14.67□□□□□ -0.06
CCDC88B-204ENST00000463837 PCNX2A6NKB5 2137 aa14.67□□□□□ -0.06
CCDC88B-204ENST00000463837 A0A0B4J2C4 111 aa14.67□□□□□ -0.06
CCDC88B-204ENST00000463837 GDF5OSQ5U4N7 250 aa14.67□□□□□ -0.06
CCDC88B-204ENST00000463837 TRBV10-2A0A0K0K1G8 114 aa14.67□□□□□ -0.06
CCDC88B-204ENST00000463837 PTPRQQ9UMZ3 2332 aa14.66□□□□□ -0.06
CCDC88B-204ENST00000463837 U3KQE9 123 aa14.66□□□□□ -0.06
CCDC88B-204ENST00000463837 CITED2Q99967 270 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-204ENST00000463837 KIF26AQ9ULI4 1882 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-204ENST00000463837 PROP1O75360 226 aa14.65□□□□□ -0.06
CCDC88B-204ENST00000463837 ACACBO00763 2458 aa14.65□□□□□ -0.06
CCDC88B-204ENST00000463837 NOTCH2Q04721 2471 aa14.65□□□□□ -0.06
CCDC88B-204ENST00000463837 DEFB112Q30KQ8 113 aa14.65□□□□□ -0.06
CCDC88B-204ENST00000463837 K7EMT4 169 aa14.65□□□□□ -0.06
CCDC88B-204ENST00000463837 CLPSL2Q6UWE3 100 aa14.65□□□□□ -0.06
CCDC88B-204ENST00000463837 RPL39P62891 51 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-204ENST00000463837 ATOX1O00244 68 aa14.64□□□□□ -0.07
CCDC88B-204ENST00000463837 A0A096LPF7 62 aa14.64□□□□□ -0.07
CCDC88B-204ENST00000463837 MRAPQ8TCY5 172 aa14.64□□□□□ -0.07
CCDC88B-204ENST00000463837 TP53TG3Q9ULZ0 132 aa14.64□□□□□ -0.07
CCDC88B-204ENST00000463837 WT1P19544 449 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-204ENST00000463837 HOXD3P31249 432 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-204ENST00000463837 TMEM131Q92545 1883 aa14.63□□□□□ -0.07
CCDC88B-204ENST00000463837 DAZ2Q13117 558 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-204ENST00000463837 DAZ4Q86SG3 579 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-204ENST00000463837 DAZ3Q9NR90 486 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-204ENST00000463837 LINC00322Q6ZN03 302 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-204ENST00000463837 C5orf56Q8N8D9 126 aa14.62□□□□□ -0.07
CCDC88B-204ENST00000463837 AJUBAQ96IF1 538 aa14.62□□□□□ -0.07
CCDC88B-204ENST00000463837 LOXL1Q08397 574 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-204ENST00000463837 NKAPP1Q8N9T2 125 aa14.61□□□□□ -0.07
CCDC88B-204ENST00000463837 ZGRF1Q86YA3 2104 aa14.61□□□□□ -0.07
CCDC88B-204ENST00000463837 IGLC6P0CF74 106 aa14.61□□□□□ -0.07
CCDC88B-204ENST00000463837 IGHV4-59P01825 116 aa14.61□□□□□ -0.07
CCDC88B-204ENST00000463837 XCL1P47992 114 aa14.61□□□□□ -0.07
CCDC88B-204ENST00000463837 SEM1Q6ZVN7 128 aa14.6□□□□□ -0.07
CCDC88B-204ENST00000463837 NDUFA11Q86Y39 141 aa14.6□□□□□ -0.07
CCDC88B-204ENST00000463837 TM2D2Q9BX73 214 aa14.6□□□□□ -0.07
CCDC88B-204ENST00000463837 ANGP03950 147 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-204ENST00000463837 PTH2Q96A98 100 aa14.6□□□□□ -0.07
CCDC88B-204ENST00000463837 H3BQ85 93 aa14.6□□□□□ -0.07
CCDC88B-204ENST00000463837 GRNP28799 593 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-204ENST00000463837 FANCD2OSQ96PS1 177 aa14.6□□□□□ -0.07
CCDC88B-204ENST00000463837 LTBP2Q14767 1821 aa14.6□□□□□ -0.07
CCDC88B-204ENST00000463837 RBM3P98179 157 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-204ENST00000463837 FAM236AA0A1B0GUQ0 79 aa14.59□□□□□ -0.07
CCDC88B-204ENST00000463837 FAM236BA0A1B0GV22 79 aa14.59□□□□□ -0.07
CCDC88B-204ENST00000463837 DAND5Q8N907 189 aa14.59□□□□□ -0.07
CCDC88B-204ENST00000463837 NOP10Q9NPE3 64 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-204ENST00000463837 TP73-AS1Q9UF72 201 aa14.59□□□□□ -0.07
CCDC88B-204ENST00000463837 TRAV26-1A0A087WT03 109 aa14.59□□□□□ -0.07
CCDC88B-204ENST00000463837 CCL24O00175 119 aa14.59□□□□□ -0.07
CCDC88B-204ENST00000463837 MSMPQ1L6U9 139 aa14.59□□□□□ -0.07
CCDC88B-204ENST00000463837 K7EQD1 137 aa14.58□□□□□ -0.08
CCDC88B-204ENST00000463837 Q8N7P7 452 aa14.58□□□□□ -0.08
CCDC88B-204ENST00000463837 SND1-IT1Q9HBX3 110 aa14.58□□□□□ -0.08
CCDC88B-204ENST00000463837 IGHV4-61A0A0C4DH41 118 aa14.58□□□□□ -0.08
CCDC88B-204ENST00000463837 C5orf38Q86SI9 138 aa14.58□□□□□ -0.08
CCDC88B-204ENST00000463837 TMEM89A2RUT3 159 aa14.57□□□□□ -0.08
CCDC88B-204ENST00000463837 C9orf66Q5T8R8 295 aa14.57□□□□□ -0.08
CCDC88B-204ENST00000463837 NCOA6Q14686 2063 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-204ENST00000463837 IGKV3D-7A0A0C4DH55 119 aa14.57□□□□□ -0.08
CCDC88B-204ENST00000463837 Q8N1Y9 231 aa14.57□□□□□ -0.08
CCDC88B-204ENST00000463837 IGHV1-58A0A0C4DH39 117 aa14.56□□□□□ -0.08
CCDC88B-204ENST00000463837 LGALS9O00182 355 aa14.56□□□□□ -0.08
CCDC88B-204ENST00000463837 TMEM258P61165 79 aa14.56□□□□□ -0.08
CCDC88B-204ENST00000463837 DAZAP2Q15038 168 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-204ENST00000463837 U3KQK5 164 aa14.56□□□□□ -0.08
CCDC88B-204ENST00000463837 GPHB5Q86YW7 130 aa14.56□□□□□ -0.08
CCDC88B-204ENST00000463837 C20orf203Q8NBC4 194 aa14.56□□□□□ -0.08
CCDC88B-204ENST00000463837 ATP5G1P05496 136 aa14.55□□□□□ -0.08
CCDC88B-204ENST00000463837 COX7B2Q8TF08 81 aa14.55□□□□□ -0.08
CCDC88B-204ENST00000463837 TRAV4A0A0B4J268 109 aa14.55□□□□□ -0.08
CCDC88B-204ENST00000463837 FREM1Q5H8C1 2179 aa14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 C16orf74Q96GX8 76 aa14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 MYCNOSP40205 109 aa14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 VSIG2Q96IQ7 327 aa14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 IGHV4-30-2A0A087WSY4 118 aa14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 A0A1B0GX51 115 aa14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 CLEC2BQ92478 149 aa14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 MDFICQ9P1T7 246 aa14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 ZNF80P51504 273 aaPredicted RBP14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 DEFB1P60022 68 aa14.54□□□□□ -0.08
CCDC88B-204ENST00000463837 DEFB136Q30KP8 78 aa14.53□□□□□ -0.08
CCDC88B-204ENST00000463837 C10orf105Q8TEF2 133 aa14.53□□□□□ -0.08
CCDC88B-204ENST00000463837 APRG1Q8IVJ8 170 aa14.53□□□□□ -0.08
CCDC88B-204ENST00000463837 J3KT08 172 aa14.53□□□□□ -0.08
CCDC88B-204ENST00000463837 SPANXB1Q9NS25 103 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-204ENST00000463837 RBX1P62877 108 aa14.52□□□□□ -0.08
CCDC88B-204ENST00000463837 ADAMTS9Q9P2N4 1935 aa14.52□□□□□ -0.08
CCDC88B-204ENST00000463837 TCL1BO95988 128 aa14.52□□□□□ -0.09
CCDC88B-204ENST00000463837 JMJD7-PLA2G4BH0Y9G9 81 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms