RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 SNRNP25Q9BV90 132 aaKnown RBP1.59□□□□□ -2.15
HERC4-208ENST00000463478 SPANXDQ9BXN6 97 aa1.59□□□□□ -2.15
HERC4-208ENST00000463478 ALPK2Q86TB3 2170 aa1.59□□□□□ -2.16
HERC4-208ENST00000463478 POLEQ07864 2286 aa1.59□□□□□ -2.16
HERC4-208ENST00000463478 MYO5AQ9Y4I1 1855 aaKnown RBP1.58□□□□□ -2.16
HERC4-208ENST00000463478 MACF1Q9UPN3 7388 aaKnown RBP1.58□□□□□ -2.16
HERC4-208ENST00000463478 DMBT1Q9UGM3 2413 aaPredicted RBP1.58□□□□□ -2.16
HERC4-208ENST00000463478 BCL9LQ86UU0 1499 aa1.58□□□□□ -2.16
HERC4-208ENST00000463478 TRAV12-2A0A075B6T6 113 aa1.58□□□□□ -2.16
HERC4-208ENST00000463478 IFNGP01579 166 aa1.58□□□□□ -2.16
HERC4-208ENST00000463478 PDE6GP18545 87 aa1.58□□□□□ -2.16
HERC4-208ENST00000463478 SNX29P2Q8IUI4 249 aa1.58□□□□□ -2.16
HERC4-208ENST00000463478 C15orf53Q8NAA6 179 aa1.58□□□□□ -2.16
HERC4-208ENST00000463478 VSTM2AQ8TAG5 236 aa1.58□□□□□ -2.16
HERC4-208ENST00000463478 PSMG3Q9BT73 122 aaPredicted RBP1.58□□□□□ -2.16
HERC4-208ENST00000463478 BOKQ9UMX3 212 aaPredicted RBP1.58□□□□□ -2.16
HERC4-208ENST00000463478 ZFP30Q9Y2G7 519 aa1.58□□□□□ -2.16
HERC4-208ENST00000463478 MYOM3Q5VTT5 1437 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 OTOGQ6ZRI0 2925 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 DNAH14Q0VDD8 3507 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 VIRMAQ69YN4 1812 aaKnown RBP1.57□□□□□ -2.16
HERC4-208ENST00000463478 TRBV6-7A0A0A0MS04 114 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 TMEM30CPA0ZSE6 113 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 GNG7O60262 68 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 SPATA45Q537H7 98 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 DPH3Q96FX2 82 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 DMAC1Q96GE9 116 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 MYO15AQ9UKN7 3530 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 FAT4Q6V0I7 4981 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 ERBINQ96RT1 1412 aa1.57□□□□□ -2.16
HERC4-208ENST00000463478 DSPP15924 2871 aaKnown RBP1.57□□□□□ -2.16
HERC4-208ENST00000463478 A0A1B0GV90 55 aa1.56□□□□□ -2.16
HERC4-208ENST00000463478 IGKV2-29A2NJV5 120 aaPredicted RBP1.56□□□□□ -2.16
HERC4-208ENST00000463478 MIF4GDA9UHW6 222 aaKnown RBP1.56□□□□□ -2.16
HERC4-208ENST00000463478 PPYP01298 95 aa1.56□□□□□ -2.16
HERC4-208ENST00000463478 PRB1P04280 392 aa1.56□□□□□ -2.16
HERC4-208ENST00000463478 POLR2JP52435 117 aaKnown RBP1.56□□□□□ -2.16
HERC4-208ENST00000463478 MRPS10P82664 201 aaKnown RBP1.56□□□□□ -2.16
HERC4-208ENST00000463478 Q6ZUT4 128 aa1.56□□□□□ -2.16
HERC4-208ENST00000463478 C22orf24Q9Y442 160 aa1.56□□□□□ -2.16
HERC4-208ENST00000463478 DIDO1Q9BTC0 2240 aaKnown RBP1.56□□□□□ -2.16
HERC4-208ENST00000463478 ROCK2O75116 1388 aaKnown RBP1.56□□□□□ -2.16
HERC4-208ENST00000463478 IBTKQ9P2D0 1353 aaPredicted RBP1.56□□□□□ -2.16
HERC4-208ENST00000463478 CDK12Q9NYV4 1490 aaPredicted RBP1.56□□□□□ -2.16
HERC4-208ENST00000463478 CR1P17927 2039 aa1.56□□□□□ -2.16
HERC4-208ENST00000463478 SYNJ1O43426 1573 aa1.55□□□□□ -2.16
HERC4-208ENST00000463478 USP54Q70EL1 1684 aa1.55□□□□□ -2.16
HERC4-208ENST00000463478 MGAMO43451 1857 aa1.55□□□□□ -2.16
HERC4-208ENST00000463478 ZNF25P17030 456 aaPredicted RBP1.55□□□□□ -2.16
HERC4-208ENST00000463478 UNQ5815/PRO19632Q6UWF5 114 aa1.55□□□□□ -2.16
HERC4-208ENST00000463478 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.55□□□□□ -2.16
HERC4-208ENST00000463478 ATG5Q9H1Y0 275 aa1.55□□□□□ -2.16
HERC4-208ENST00000463478 ADGRB1O14514 1584 aa1.55□□□□□ -2.16
HERC4-208ENST00000463478 THOC2Q8NI27 1593 aaKnown RBP1.55□□□□□ -2.16
HERC4-208ENST00000463478 NBPF19A0A087WUL8 3843 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 FANCMQ8IYD8 2048 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 BAZ2BQ9UIF8 2168 aaKnown RBP1.54□□□□□ -2.16
HERC4-208ENST00000463478 AHNAK2Q8IVF2 5795 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 WDFY3Q8IZQ1 3526 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 NUPR2A6NF83 97 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 DNAL4O96015 105 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 S100A1P23297 94 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 SPANXN1Q5VSR9 72 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 OR2T2Q6IF00 324 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 LYPD5Q6UWN5 251 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 NAA60Q9H7X0 242 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 MRPL35Q9NZE8 188 aaKnown RBP1.54□□□□□ -2.16
HERC4-208ENST00000463478 ITPR2Q14571 2701 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 COL12A1Q99715 3063 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 FSIP2Q5CZC0 6907 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 FREM1Q5H8C1 2179 aa1.54□□□□□ -2.16
HERC4-208ENST00000463478 LOC400499M0QZD8 3231 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 PIGBOS1A0A0B4J2F0 54 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 TRBV10-1A0A0K0K1A3 114 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 HIGD1CA8MV81 97 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 LINC00587B1AMM8 73 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 PIPP12273 146 aaPredicted RBP1.53□□□□□ -2.16
HERC4-208ENST00000463478 NEBP20929 6669 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 S100PP25815 95 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 MICAL3Q7RTP6 2002 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 DEFB132Q7Z7B7 95 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 C10orf105Q8TEF2 133 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 WFDC10AQ9H1F0 79 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 WNK1Q9H4A3 2382 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 MRPL36Q9P0J6 103 aaKnown RBP1.53□□□□□ -2.16
HERC4-208ENST00000463478 FAM135AQ9P2D6 1515 aa1.53□□□□□ -2.16
HERC4-208ENST00000463478 SYNE2Q8WXH0 6885 aaKnown RBP1.53□□□□□ -2.16
HERC4-208ENST00000463478 MED12LQ86YW9 2145 aa1.52□□□□□ -2.17
HERC4-208ENST00000463478 KIAA1549Q9HCM3 1950 aa1.52□□□□□ -2.17
HERC4-208ENST00000463478 DAPK1P53355 1430 aa1.52□□□□□ -2.17
HERC4-208ENST00000463478 PITX3O75364 302 aa1.52□□□□□ -2.17
HERC4-208ENST00000463478 IGLV3-1P01715 115 aa1.52□□□□□ -2.17
HERC4-208ENST00000463478 MEIG1Q5JSS6 88 aa1.52□□□□□ -2.17
HERC4-208ENST00000463478 C12orf73Q69YU5 71 aa1.52□□□□□ -2.17
HERC4-208ENST00000463478 PP6455Q8WZ26 134 aa1.52□□□□□ -2.17
HERC4-208ENST00000463478 AGPAT4-IT1Q9H0P7 198 aa1.52□□□□□ -2.17
HERC4-208ENST00000463478 CICQ96RK0 1608 aaPredicted RBP1.51□□□□□ -2.17
HERC4-208ENST00000463478 HERC2O95714 4834 aa1.51□□□□□ -2.17
HERC4-208ENST00000463478 CXorf51AA0A1B0GTR3 108 aa1.51□□□□□ -2.17
HERC4-208ENST00000463478 NDUFB6O95139 128 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms