RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 DERL1Q9BUN8 251 aa15.59■□□□□ 0.09
PTPN4-208ENST00000460289 TNFRSF18Q9Y5U5 241 aa15.59■□□□□ 0.09
PTPN4-208ENST00000460289 GAGE12JA6NER3 117 aa15.58■□□□□ 0.08
PTPN4-208ENST00000460289 RPL19P84098 196 aaKnown RBP15.58■□□□□ 0.08
PTPN4-208ENST00000460289 GAGE1Q13065 139 aa15.58■□□□□ 0.08
PTPN4-208ENST00000460289 GAGE4Q13068 117 aa15.58■□□□□ 0.08
PTPN4-208ENST00000460289 GAGE5Q13069 117 aa15.58■□□□□ 0.08
PTPN4-208ENST00000460289 GAGE13Q4V321 117 aa15.58■□□□□ 0.08
PTPN4-208ENST00000460289 LINC01556Q5JQF7 62 aa15.58■□□□□ 0.08
PTPN4-208ENST00000460289 SPATA12Q7Z6I5 190 aa15.58■□□□□ 0.08
PTPN4-208ENST00000460289 A0A087WWL8 130 aa15.57■□□□□ 0.08
PTPN4-208ENST00000460289 TAGLN2P37802 199 aaKnown RBP15.57■□□□□ 0.08
PTPN4-208ENST00000460289 C14orf178Q8N769 122 aaPredicted RBP15.57■□□□□ 0.08
PTPN4-208ENST00000460289 BCL2P10415 239 aa15.56■□□□□ 0.08
PTPN4-208ENST00000460289 CENPWQ5EE01 88 aa15.56■□□□□ 0.08
PTPN4-208ENST00000460289 DAZAP1Q96EP5 407 aaKnown RBP15.56■□□□□ 0.08
PTPN4-208ENST00000460289 SMIM12Q96EX1 92 aa15.56■□□□□ 0.08
PTPN4-208ENST00000460289 SSBP4Q9BWG4 385 aaPredicted RBP15.56■□□□□ 0.08
PTPN4-208ENST00000460289 MED9Q9NWA0 146 aa15.56■□□□□ 0.08
PTPN4-208ENST00000460289 VAX2Q9UIW0 290 aa15.56■□□□□ 0.08
PTPN4-208ENST00000460289 EREGO14944 169 aa15.55■□□□□ 0.08
PTPN4-208ENST00000460289 OR5AL1P0C617 328 aa15.55■□□□□ 0.08
PTPN4-208ENST00000460289 LINC00694P0DN24 101 aa15.55■□□□□ 0.08
PTPN4-208ENST00000460289 GNG4P50150 75 aa15.55■□□□□ 0.08
PTPN4-208ENST00000460289 SNAI2O43623 268 aa15.54■□□□□ 0.08
PTPN4-208ENST00000460289 A0A087WWC5 75 aa15.53■□□□□ 0.08
PTPN4-208ENST00000460289 TRBV10-1A0A0K0K1A3 114 aa15.53■□□□□ 0.08
PTPN4-208ENST00000460289 RAB19A4D1S5 217 aa15.53■□□□□ 0.08
PTPN4-208ENST00000460289 IGLV2-8P01709 118 aa15.53■□□□□ 0.08
PTPN4-208ENST00000460289 ERVFC1-1P60608 527 aa15.53■□□□□ 0.08
PTPN4-208ENST00000460289 SPANXN1Q5VSR9 72 aa15.53■□□□□ 0.08
PTPN4-208ENST00000460289 OR10AG1Q8NH19 301 aa15.53■□□□□ 0.08
PTPN4-208ENST00000460289 Q9UF83 564 aa15.53■□□□□ 0.08
PTPN4-208ENST00000460289 BLOC1S1P78537 153 aa15.52■□□□□ 0.08
PTPN4-208ENST00000460289 BIN3Q9NQY0 253 aa15.52■□□□□ 0.08
PTPN4-208ENST00000460289 IBA57-AS1B1ANH7 110 aa15.51■□□□□ 0.07
PTPN4-208ENST00000460289 RPS20P60866 119 aaKnown RBP15.51■□□□□ 0.07
PTPN4-208ENST00000460289 IGHV3-30P01768 117 aa15.5■□□□□ 0.07
PTPN4-208ENST00000460289 IGHV3-33P01772 117 aa15.5■□□□□ 0.07
PTPN4-208ENST00000460289 IGHV3-30-3P0DP02 117 aa15.5■□□□□ 0.07
PTPN4-208ENST00000460289 IGHV3-30-5P0DP03 117 aa15.5■□□□□ 0.07
PTPN4-208ENST00000460289 KRTAP10-2P60368 255 aa15.5■□□□□ 0.07
PTPN4-208ENST00000460289 RAB4BP61018 213 aa15.5■□□□□ 0.07
PTPN4-208ENST00000460289 ALKAL2Q6UX46 152 aa15.5■□□□□ 0.07
PTPN4-208ENST00000460289 PGPEP1Q9NXJ5 209 aa15.5■□□□□ 0.07
PTPN4-208ENST00000460289 C19orf71A6NCJ1 209 aa15.49■□□□□ 0.07
PTPN4-208ENST00000460289 RPL36AP83881 106 aaKnown RBP15.49■□□□□ 0.07
PTPN4-208ENST00000460289 OR2D3Q8NGH3 330 aa15.49■□□□□ 0.07
PTPN4-208ENST00000460289 RPL36ALQ969Q0 106 aaKnown RBP15.49■□□□□ 0.07
PTPN4-208ENST00000460289 XKRY2A2RUG3 117 aa15.48■□□□□ 0.07
PTPN4-208ENST00000460289 TRBV7-3A0A075B6L6 115 aa15.47■□□□□ 0.07
PTPN4-208ENST00000460289 A0A087WTM6 91 aa15.47■□□□□ 0.07
PTPN4-208ENST00000460289 MUC21A0A0G2JKD1 596 aa15.47■□□□□ 0.07
PTPN4-208ENST00000460289 MUC21A0A140T8X8 626 aa15.47■□□□□ 0.07
PTPN4-208ENST00000460289 CDK2AP2O75956 126 aa15.47■□□□□ 0.07
PTPN4-208ENST00000460289 P01737 135 aa15.47■□□□□ 0.07
PTPN4-208ENST00000460289 ZNF56Q15929 161 aa15.47■□□□□ 0.07
PTPN4-208ENST00000460289 TRBV20OR9-2A0A075B6H5 130 aa15.46■□□□□ 0.07
PTPN4-208ENST00000460289 PSCAO43653 123 aa15.46■□□□□ 0.07
PTPN4-208ENST00000460289 SMIM17P0DL12 118 aa15.46■□□□□ 0.07
PTPN4-208ENST00000460289 SSTP61278 116 aa15.46■□□□□ 0.07
PTPN4-208ENST00000460289 FER1L6-AS1Q8NA97 138 aa15.46■□□□□ 0.07
PTPN4-208ENST00000460289 F5H697 171 aa15.45■□□□□ 0.06
PTPN4-208ENST00000460289 IGLC6P0CF74 106 aa15.45■□□□□ 0.06
PTPN4-208ENST00000460289 LAGE3Q14657 143 aa15.45■□□□□ 0.06
PTPN4-208ENST00000460289 OR10G8Q8NGN5 311 aa15.45■□□□□ 0.06
PTPN4-208ENST00000460289 AP1S3Q96PC3 154 aa15.45■□□□□ 0.06
PTPN4-208ENST00000460289 TPPP3Q9BW30 176 aa15.45■□□□□ 0.06
PTPN4-208ENST00000460289 GZMBP10144 247 aa15.44■□□□□ 0.06
PTPN4-208ENST00000460289 UBE2D3P61077 147 aa15.44■□□□□ 0.06
PTPN4-208ENST00000460289 UBE2D2P62837 147 aa15.44■□□□□ 0.06
PTPN4-208ENST00000460289 CDPF1Q6NVV7 123 aa15.44■□□□□ 0.06
PTPN4-208ENST00000460289 LYPD6BQ8NI32 183 aa15.44■□□□□ 0.06
PTPN4-208ENST00000460289 RBFOX3A6NFN3 312 aa15.43■□□□□ 0.06
PTPN4-208ENST00000460289 F2Z2F3 143 aa15.43■□□□□ 0.06
PTPN4-208ENST00000460289 CACNG7P62955 275 aa15.43■□□□□ 0.06
PTPN4-208ENST00000460289 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.43■□□□□ 0.06
PTPN4-208ENST00000460289 Q9HAA7 133 aa15.43■□□□□ 0.06
PTPN4-208ENST00000460289 URGCP-MRPS24S4R325 110 aa15.43■□□□□ 0.06
PTPN4-208ENST00000460289 RYR1P21817 5038 aa15.42■□□□□ 0.06
PTPN4-208ENST00000460289 LRP1BQ9NZR2 4599 aa15.42■□□□□ 0.06
PTPN4-208ENST00000460289 A0A1B0GVG6 124 aa15.42■□□□□ 0.06
PTPN4-208ENST00000460289 TMEM250H0YL14 139 aa15.42■□□□□ 0.06
PTPN4-208ENST00000460289 TOR2AQ5JU69 321 aa15.42■□□□□ 0.06
PTPN4-208ENST00000460289 KIF25-AS1Q9Y6Z4 181 aa15.42■□□□□ 0.06
PTPN4-208ENST00000460289 NKX2-5P52952 324 aaPredicted RBP15.41■□□□□ 0.06
PTPN4-208ENST00000460289 NEXN-AS1Q8NBZ9 246 aa15.41■□□□□ 0.06
PTPN4-208ENST00000460289 NUDT10Q8NFP7 164 aa15.41■□□□□ 0.06
PTPN4-208ENST00000460289 NUDT11Q96G61 164 aa15.41■□□□□ 0.06
PTPN4-208ENST00000460289 TM2D2Q9BX73 214 aa15.41■□□□□ 0.06
PTPN4-208ENST00000460289 TRAV8-3A0A0A6YYJ7 113 aa15.4■□□□□ 0.06
PTPN4-208ENST00000460289 OCC1Q8TAD7 63 aa15.4■□□□□ 0.06
PTPN4-208ENST00000460289 KCNIP4Q6PIL6 250 aa15.39■□□□□ 0.05
PTPN4-208ENST00000460289 DAZ4Q86SG3 579 aaKnown RBP15.39■□□□□ 0.05
PTPN4-208ENST00000460289 NIT1Q86X76 327 aa15.39■□□□□ 0.05
PTPN4-208ENST00000460289 Q8N3U1 123 aa15.39■□□□□ 0.05
PTPN4-208ENST00000460289 DAZ3Q9NR90 486 aaKnown RBP15.39■□□□□ 0.05
PTPN4-208ENST00000460289 LYZL1Q6UWQ5 148 aa15.38■□□□□ 0.05
PTPN4-208ENST00000460289 CHCHD7Q9BUK0 85 aa15.38■□□□□ 0.05
PTPN4-208ENST00000460289 A0A087WX48 190 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms