RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 GAGE2EQ4V326 116 aa11.77□□□□□ -0.53
LMNB1-203ENST00000460265 PPDPFLQ8WWR9 84 aa11.77□□□□□ -0.53
LMNB1-203ENST00000460265 GAGE2DQ9UEU5 116 aa11.77□□□□□ -0.53
LMNB1-203ENST00000460265 TEX15Q9BXT5 2789 aa11.77□□□□□ -0.53
LMNB1-203ENST00000460265 CELSR2Q9HCU4 2923 aa11.76□□□□□ -0.53
LMNB1-203ENST00000460265 FAM223BA6NKX1 122 aa11.76□□□□□ -0.53
LMNB1-203ENST00000460265 FHL3Q13643 280 aa11.76□□□□□ -0.53
LMNB1-203ENST00000460265 ODF1Q14990 250 aa11.76□□□□□ -0.53
LMNB1-203ENST00000460265 FAM223AQ8IWN6 122 aa11.76□□□□□ -0.53
LMNB1-203ENST00000460265 MAPKAPK5-AS1Q8N8E1 139 aa11.76□□□□□ -0.53
LMNB1-203ENST00000460265 HHLA3Q9XRX5 114 aa11.76□□□□□ -0.53
LMNB1-203ENST00000460265 HIST2H2BDQ6DRA6 164 aa11.76□□□□□ -0.53
LMNB1-203ENST00000460265 C14orf178Q8N769 122 aaPredicted RBP11.76□□□□□ -0.53
LMNB1-203ENST00000460265 GAS8-AS1O95177 125 aa11.75□□□□□ -0.53
LMNB1-203ENST00000460265 SRSF1Q07955 248 aaKnown RBP eCLIP11.75□□□□□ -0.53
LMNB1-203ENST00000460265 ATP6V0E2Q8NHE4 81 aa11.75□□□□□ -0.53
LMNB1-203ENST00000460265 AJUBAQ96IF1 538 aa11.75□□□□□ -0.53
LMNB1-203ENST00000460265 TNFRSF6BO95407 300 aa11.74□□□□□ -0.53
LMNB1-203ENST00000460265 SYNJ2BPP57105 145 aa11.74□□□□□ -0.53
LMNB1-203ENST00000460265 CFAP126Q5VTH2 177 aa11.74□□□□□ -0.53
LMNB1-203ENST00000460265 KIR2DL4Q99706 377 aa11.74□□□□□ -0.53
LMNB1-203ENST00000460265 CLPSL1A2RUU4 121 aa11.74□□□□□ -0.53
LMNB1-203ENST00000460265 SNCGO76070 127 aa11.74□□□□□ -0.53
LMNB1-203ENST00000460265 C9orf139Q6ZV77 190 aa11.74□□□□□ -0.53
LMNB1-203ENST00000460265 TRAV12-3A0A0B4J271 114 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 LINC01549A6NIU2 74 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 CCDC179H3BU77 68 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 TAL2Q16559 108 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 FAM159AQ6UWV7 190 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 MYOZ3Q8TDC0 251 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 USMG5Q96IX5 58 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 SCGB1C2P0DMR2 95 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 ID1P41134 155 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 SMCPP49901 116 aaPredicted RBP11.73□□□□□ -0.53
LMNB1-203ENST00000460265 PIFOQ8TCI5 191 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 VCX2Q9H322 139 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 IGKV3D-20A0A0C4DH25 116 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 IGHG4P01861 327 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 ASIPP42127 132 aa11.73□□□□□ -0.53
LMNB1-203ENST00000460265 SRSF9Q13242 221 aaKnown RBP eCLIP11.73□□□□□ -0.53
LMNB1-203ENST00000460265 DAZ1Q9NQZ3 744 aaKnown RBP11.73□□□□□ -0.53
LMNB1-203ENST00000460265 TMEM262E9PQX1 116 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 GNRH2O43555 120 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 EDN2P20800 178 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 LINC01356Q8N9X3 169 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 DUX3Q96PT4 197 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 MRPL35Q9NZE8 188 aaKnown RBP11.72□□□□□ -0.53
LMNB1-203ENST00000460265 CD7P09564 240 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 TMEM158Q8WZ71 300 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 TRAV12-2A0A075B6T6 113 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 TRAV21A0A0B4J279 112 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 A8MWV9 139 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 NDUFA4O00483 81 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 ZFP2Q6ZN57 461 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 TEN1Q86WV5 123 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 C11orf21Q9P2W6 132 aa11.72□□□□□ -0.53
LMNB1-203ENST00000460265 C20orf173Q96LM9 149 aa11.71□□□□□ -0.53
LMNB1-203ENST00000460265 FLNAP21333 2647 aaKnown RBP11.71□□□□□ -0.54
LMNB1-203ENST00000460265 TRAV8-2A0A0B4J237 113 aa11.71□□□□□ -0.54
LMNB1-203ENST00000460265 ATP5LO75964 103 aa11.7□□□□□ -0.54
LMNB1-203ENST00000460265 IGHG2P01859 326 aa11.7□□□□□ -0.54
LMNB1-203ENST00000460265 SCGB1D4Q6XE38 83 aa11.7□□□□□ -0.54
LMNB1-203ENST00000460265 TRBV6-1A0A0K0K1D8 114 aa11.7□□□□□ -0.54
LMNB1-203ENST00000460265 DEFB136Q30KP8 78 aa11.7□□□□□ -0.54
LMNB1-203ENST00000460265 CARD19Q96LW7 228 aa11.7□□□□□ -0.54
LMNB1-203ENST00000460265 ZNF493Q6ZR52 646 aa11.7□□□□□ -0.54
LMNB1-203ENST00000460265 CITED1Q99966 193 aa11.7□□□□□ -0.54
LMNB1-203ENST00000460265 HECTD1Q9ULT8 2610 aa11.69□□□□□ -0.54
LMNB1-203ENST00000460265 A0A1W2PRX2 142 aa11.69□□□□□ -0.54
LMNB1-203ENST00000460265 NDUFV3P56181 108 aaKnown RBP11.69□□□□□ -0.54
LMNB1-203ENST00000460265 LINC00477Q96M19 166 aa11.69□□□□□ -0.54
LMNB1-203ENST00000460265 A0A087WWL8 130 aa11.69□□□□□ -0.54
LMNB1-203ENST00000460265 OVOL1O14753 267 aa11.69□□□□□ -0.54
LMNB1-203ENST00000460265 LYRM7Q5U5X0 104 aa11.69□□□□□ -0.54
LMNB1-203ENST00000460265 A6NDX4 124 aa11.68□□□□□ -0.54
LMNB1-203ENST00000460265 NHLRC4P0CG21 123 aaPredicted RBP11.68□□□□□ -0.54
LMNB1-203ENST00000460265 IFITM1P13164 125 aa11.68□□□□□ -0.54
LMNB1-203ENST00000460265 MORN3Q6PF18 240 aaPredicted RBP11.68□□□□□ -0.54
LMNB1-203ENST00000460265 CUBNO60494 3623 aa11.68□□□□□ -0.54
LMNB1-203ENST00000460265 ITPR3Q14573 2671 aa11.68□□□□□ -0.54
LMNB1-203ENST00000460265 IGHV7-4-1A0A0J9YVY3 117 aa11.68□□□□□ -0.54
LMNB1-203ENST00000460265 SNRPD3P62318 126 aaKnown RBP11.68□□□□□ -0.54
LMNB1-203ENST00000460265 KRTAP10-9P60411 292 aa11.67□□□□□ -0.54
LMNB1-203ENST00000460265 HIST2H2BCQ6DN03 193 aa11.67□□□□□ -0.54
LMNB1-203ENST00000460265 NXT2Q9NPJ8 142 aaKnown RBP11.67□□□□□ -0.54
LMNB1-203ENST00000460265 U3KQK5 164 aa11.67□□□□□ -0.54
LMNB1-203ENST00000460265 SLC25A16P16260 332 aa11.67□□□□□ -0.54
LMNB1-203ENST00000460265 BBC3Q96PG8 261 aaPredicted RBP11.67□□□□□ -0.54
LMNB1-203ENST00000460265 ZMAT4Q9H898 229 aa11.67□□□□□ -0.54
LMNB1-203ENST00000460265 PRR9Q5T870 116 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 Q96MF0 132 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 YAE1D1Q9NRH1 226 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 BRI3O95415 125 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 IGLC6P0CF74 106 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 HLA-DRB4P13762 266 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 SPINK13Q1W4C9 94 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 GATD1Q8NB37 220 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 HLA-DRB4X5D2U9 266 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 IGHV3OR16-12A0A075B7B8 117 aa11.66□□□□□ -0.54
LMNB1-203ENST00000460265 MYMXA0A1B0GTQ4 84 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms