RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 M0R381 172 aa11.85□□□□□ -0.51
USP39-208ENST00000455732 OR5AL1P0C617 328 aa11.85□□□□□ -0.51
USP39-208ENST00000455732 Q6ZSN1 163 aa11.85□□□□□ -0.51
USP39-208ENST00000455732 BIN3Q9NQY0 253 aa11.85□□□□□ -0.51
USP39-208ENST00000455732 RBFOX3A6NFN3 312 aa11.84□□□□□ -0.51
USP39-208ENST00000455732 NDUFS6O75380 124 aaKnown RBP11.84□□□□□ -0.51
USP39-208ENST00000455732 LINC00694P0DN24 101 aa11.84□□□□□ -0.51
USP39-208ENST00000455732 CRYGDP07320 174 aa11.83□□□□□ -0.52
USP39-208ENST00000455732 RPS20P60866 119 aaKnown RBP11.83□□□□□ -0.52
USP39-208ENST00000455732 TNP2Q05952 138 aa11.83□□□□□ -0.52
USP39-208ENST00000455732 OR10AG1Q8NH19 301 aa11.83□□□□□ -0.52
USP39-208ENST00000455732 DAZAP1Q96EP5 407 aaKnown RBP11.83□□□□□ -0.52
USP39-208ENST00000455732 K7EP13 123 aa11.82□□□□□ -0.52
USP39-208ENST00000455732 FAM74A4Q5TZK3 123 aa11.82□□□□□ -0.52
USP39-208ENST00000455732 A0A087WWL8 130 aa11.81□□□□□ -0.52
USP39-208ENST00000455732 IGLC6P0CF74 106 aa11.81□□□□□ -0.52
USP39-208ENST00000455732 DNAH10OSP0CZ25 163 aa11.81□□□□□ -0.52
USP39-208ENST00000455732 WFDC10BQ8IUB3 73 aa11.81□□□□□ -0.52
USP39-208ENST00000455732 OR2D3Q8NGH3 330 aa11.81□□□□□ -0.52
USP39-208ENST00000455732 P01737 135 aa11.8□□□□□ -0.52
USP39-208ENST00000455732 TOR2AQ5JU69 321 aa11.8□□□□□ -0.52
USP39-208ENST00000455732 C14orf178Q8N769 122 aaPredicted RBP11.8□□□□□ -0.52
USP39-208ENST00000455732 ATP6V0E2Q8NHE4 81 aa11.8□□□□□ -0.52
USP39-208ENST00000455732 GTSF1LQ9H1H1 148 aa11.8□□□□□ -0.52
USP39-208ENST00000455732 LY96Q9Y6Y9 160 aa11.8□□□□□ -0.52
USP39-208ENST00000455732 XKRY2A2RUG3 117 aa11.79□□□□□ -0.52
USP39-208ENST00000455732 LELP1Q5T871 98 aa11.79□□□□□ -0.52
USP39-208ENST00000455732 SPANXN1Q5VSR9 72 aa11.79□□□□□ -0.52
USP39-208ENST00000455732 FAM210AQ96ND0 272 aa11.79□□□□□ -0.52
USP39-208ENST00000455732 TRAV9-2A0A087WT02 112 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 TRBV10-1A0A0K0K1A3 114 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 GAGE12JA6NER3 117 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 K7EN84 100 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 LINC00315P59091 139 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 GAGE1Q13065 139 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 GAGE4Q13068 117 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 GAGE5Q13069 117 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 GAGE13Q4V321 117 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 FER1L6-AS1Q8NA97 138 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 Q9UF83 564 aa11.78□□□□□ -0.52
USP39-208ENST00000455732 GZMBP10144 247 aa11.77□□□□□ -0.53
USP39-208ENST00000455732 EVI2AP22794 236 aa11.77□□□□□ -0.53
USP39-208ENST00000455732 RAB4BP61018 213 aa11.77□□□□□ -0.53
USP39-208ENST00000455732 TEX261Q6UWH6 196 aa11.77□□□□□ -0.53
USP39-208ENST00000455732 NUDT10Q8NFP7 164 aa11.77□□□□□ -0.53
USP39-208ENST00000455732 OCC1Q8TAD7 63 aa11.77□□□□□ -0.53
USP39-208ENST00000455732 NUDT11Q96G61 164 aa11.77□□□□□ -0.53
USP39-208ENST00000455732 AP1S3Q96PC3 154 aa11.77□□□□□ -0.53
USP39-208ENST00000455732 EIF5A2Q9GZV4 153 aaKnown RBP11.77□□□□□ -0.53
USP39-208ENST00000455732 RYR1P21817 5038 aa11.77□□□□□ -0.53
USP39-208ENST00000455732 TRAV8-6A0A0B4J262 113 aa11.76□□□□□ -0.53
USP39-208ENST00000455732 IGHV3-38A0A0C4DH36 116 aa11.76□□□□□ -0.53
USP39-208ENST00000455732 MUC21A0A0G2JKD1 596 aa11.76□□□□□ -0.53
USP39-208ENST00000455732 MUC21A0A140T8X8 626 aa11.76□□□□□ -0.53
USP39-208ENST00000455732 F2Z2F3 143 aa11.76□□□□□ -0.53
USP39-208ENST00000455732 LINC01556Q5JQF7 62 aa11.76□□□□□ -0.53
USP39-208ENST00000455732 Q6ZRN7 208 aaPredicted RBP11.76□□□□□ -0.53
USP39-208ENST00000455732 CACNG7P62955 275 aa11.75□□□□□ -0.53
USP39-208ENST00000455732 OR10J3Q5JRS4 329 aa11.75□□□□□ -0.53
USP39-208ENST00000455732 C10orf126Q8N4M7 172 aa11.75□□□□□ -0.53
USP39-208ENST00000455732 OR10G8Q8NGN5 311 aa11.75□□□□□ -0.53
USP39-208ENST00000455732 RPP21Q9H633 154 aaKnown RBP11.75□□□□□ -0.53
USP39-208ENST00000455732 KIF25-AS1Q9Y6Z4 181 aa11.75□□□□□ -0.53
USP39-208ENST00000455732 CTRLP40313 264 aa11.74□□□□□ -0.53
USP39-208ENST00000455732 NFE4Q86UQ8 179 aa11.74□□□□□ -0.53
USP39-208ENST00000455732 TPPP3Q9BW30 176 aa11.74□□□□□ -0.53
USP39-208ENST00000455732 A0A087WWC5 75 aa11.73□□□□□ -0.53
USP39-208ENST00000455732 SRP19P09132 144 aaKnown RBP11.73□□□□□ -0.53
USP39-208ENST00000455732 RPL36AP83881 106 aaKnown RBP11.73□□□□□ -0.53
USP39-208ENST00000455732 ZNF56Q15929 161 aa11.73□□□□□ -0.53
USP39-208ENST00000455732 WDR73Q6P4I2 378 aa11.73□□□□□ -0.53
USP39-208ENST00000455732 FAM231DQ6ZW35 169 aa11.73□□□□□ -0.53
USP39-208ENST00000455732 RPL36ALQ969Q0 106 aaKnown RBP11.73□□□□□ -0.53
USP39-208ENST00000455732 SMIM7Q9BQ49 75 aa11.73□□□□□ -0.53
USP39-208ENST00000455732 CNFNQ9BYD5 112 aa11.73□□□□□ -0.53
USP39-208ENST00000455732 RNASE7Q9H1E1 156 aaKnown RBP11.73□□□□□ -0.53
USP39-208ENST00000455732 TRBV7-3A0A075B6L6 115 aa11.72□□□□□ -0.53
USP39-208ENST00000455732 SMIM17P0DL12 118 aa11.72□□□□□ -0.53
USP39-208ENST00000455732 CEBPGP53567 150 aa11.72□□□□□ -0.53
USP39-208ENST00000455732 UBE2D3P61077 147 aa11.72□□□□□ -0.53
USP39-208ENST00000455732 UBE2D2P62837 147 aa11.72□□□□□ -0.53
USP39-208ENST00000455732 LYZL1Q6UWQ5 148 aa11.72□□□□□ -0.53
USP39-208ENST00000455732 MSRB1Q9NZV6 116 aa11.72□□□□□ -0.53
USP39-208ENST00000455732 SSTP61278 116 aa11.71□□□□□ -0.53
USP39-208ENST00000455732 LRP1BQ9NZR2 4599 aa11.71□□□□□ -0.54
USP39-208ENST00000455732 TRGC1P0CF51 173 aa11.7□□□□□ -0.54
USP39-208ENST00000455732 CT83Q5H943 113 aa11.7□□□□□ -0.54
USP39-208ENST00000455732 LINC01551Q86U37 167 aa11.7□□□□□ -0.54
USP39-208ENST00000455732 NEXN-AS1Q8NBZ9 246 aa11.7□□□□□ -0.54
USP39-208ENST00000455732 ZNF727A8MUV8 499 aa11.69□□□□□ -0.54
USP39-208ENST00000455732 IBA57-AS1B1ANH7 110 aa11.69□□□□□ -0.54
USP39-208ENST00000455732 F5H697 171 aa11.69□□□□□ -0.54
USP39-208ENST00000455732 SMDT1Q9H4I9 107 aa11.69□□□□□ -0.54
USP39-208ENST00000455732 TNFRSF18Q9Y5U5 241 aa11.69□□□□□ -0.54
USP39-208ENST00000455732 C16orf90A8MZG2 172 aa11.68□□□□□ -0.54
USP39-208ENST00000455732 GATCO43716 136 aaKnown RBP11.68□□□□□ -0.54
USP39-208ENST00000455732 NTF3P20783 257 aa11.68□□□□□ -0.54
USP39-208ENST00000455732 GTSF1Q8WW33 167 aa11.68□□□□□ -0.54
USP39-208ENST00000455732 A8MWL6 223 aa11.67□□□□□ -0.54
USP39-208ENST00000455732 ERVFC1-1P60608 527 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms