RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 Q96M85 177 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 VAMP8Q9BV40 100 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 SNHG12Q9BXW3 62 aa1.46□□□□□ -2.18
CCDC88A-208ENST00000444458 IGKV2D-26A0A0A0MRZ7 120 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 ZNF345Q14585 488 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 DEFB134Q4QY38 66 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 C1orf134Q5TEV5 83 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 Q8IYB0 196 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 TTC9CQ8N5M4 171 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 Q8NDZ9 215 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 CMTM2Q8TAZ6 248 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 AQP10Q96PS8 301 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 SCP2D1Q9UJQ7 156 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 KIAA1109Q2LD37 5005 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 DMBT1Q9UGM3 2413 aaPredicted RBP1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 TRAV17A0A0B4J275 112 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 OR51F1A6NGY5 319 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 M0R2P5 195 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 NDUFB6O95139 128 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 HOXB6P17509 224 aaKnown RBP1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 S100A7L2Q5SY68 101 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 C9orf106Q8NAJ2 232 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 TP53TG3Q9ULZ0 132 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 SCN9AQ15858 1988 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 NUP210LQ5VU65 1888 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 ACANP16112 2415 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 ANAPC1Q9H1A4 1944 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 IGLV3-9A0A075B6K5 115 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 NBPF19A0A087WUL8 3843 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 C5orf67F2Z3F1 127 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 CGAP01215 116 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 SNCAP37840 140 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 ATP11AUNQ6ZP68 121 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 VSTM2AQ8TAG5 236 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 DPY30Q9C005 99 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 NBEAL1Q6ZS30 2694 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 MON2Q7Z3U7 1717 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 HEATR5AQ86XA9 2040 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 TMSB15BA0A087X1C1 80 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 TRAV10A0A0B4J240 114 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 TCRBV3S1A0A5B6 114 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 TCRBV4S1A1TA0A5B7 111 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 G3V3Q6 166 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 LY6EQ16553 131 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 Q8N9L7 120 aa1.45□□□□□ -2.18
CCDC88A-208ENST00000444458 MYO5AQ9Y4I1 1855 aaKnown RBP1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 AFDNP55196 1824 aaKnown RBP1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 ANKRD36BQ8N2N9 1353 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 F8P00451 2351 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 LRRC37A2A6NM11 1700 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 UQCRHLA0A096LP55 91 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 UQCRHP07919 91 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 ARPINQ7Z6K5 226 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 Q8N814 137 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 SCN11AQ9UI33 1791 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 ERC2-IT1O76042 136 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 MPC2O95563 127 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 CTSGP08311 255 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 BRS3P32247 399 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 SSR2P43308 183 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 LINC00526Q96FQ7 95 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 DENND4CQ5VZ89 1909 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 NRXN2Q9P2S2 1712 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 MYH9P35579 1960 aaKnown RBP1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 MYH7BA7E2Y1 1941 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 PIRTP0C851 137 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 PLXNA3P51805 1871 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 LCE1AQ5T7P2 110 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 C12orf73Q69YU5 71 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 Q6AWC8 147 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 UBR3Q6ZT12 1888 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 C10orf105Q8TEF2 133 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 TSKUQ8WUA8 353 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 ZFC3H1O60293 1989 aaKnown RBP1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 MYO10Q9HD67 2058 aa1.44□□□□□ -2.18
CCDC88A-208ENST00000444458 ANKRD50Q9ULJ7 1429 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 KIF20BQ96Q89 1820 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 IGKV2-28A0A075B6P5 120 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 IGKV2D-28P01615 120 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 GYPBP06028 91 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 SPANXN1Q5VSR9 72 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 UNQ5815/PRO19632Q6UWF5 114 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 DYNLRB2Q8TF09 96 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 R4GN34 69 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 UBR2Q8IWV8 1755 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 COLCA2A8K830 154 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 TMEM262E9PQX1 116 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 POLR2JP52435 117 aaKnown RBP1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 ASB16-AS1Q495Z4 193 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 ZNF826PQ6ZT77 177 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 IGLV2-18A0A075B6J9 118 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 TRAV14DV4A0A0A6YYC5 116 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 OOSP1A8MZH6 123 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 CLPSP04118 112 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 SLC25A26Q70HW3 274 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 CCL4L1Q8NHW4 92 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 ATG5Q9H1Y0 275 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 PRO1933Q9H354 126 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 ANKRD31Q8N7Z5 1873 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 TP53BP1Q12888 1972 aaPredicted RBP1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms