RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 LGALS9CQ6DKI2 356 aa9.42□□□□□ -0.9
TCOF1-205ENST00000439160 TRBV25-1A0A075B6N4 114 aa9.42□□□□□ -0.9
TCOF1-205ENST00000439160 C9orf47Q6ZRZ4 202 aa9.42□□□□□ -0.9
TCOF1-205ENST00000439160 PAX4O43316 350 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 KLF5Q13887 457 aaPredicted RBP9.41□□□□□ -0.9
TCOF1-205ENST00000439160 TMEM86BQ8N661 226 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 GTSF1LQ9H1H1 148 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 EXPH5Q8NEV8 1989 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 RBMY1BA6NDE4 496 aaKnown RBP9.41□□□□□ -0.9
TCOF1-205ENST00000439160 RBMY1EA6NEQ0 496 aaKnown RBP9.41□□□□□ -0.9
TCOF1-205ENST00000439160 RBMY1DP0C7P1 496 aaKnown RBP9.41□□□□□ -0.9
TCOF1-205ENST00000439160 RBMY1A1P0DJD3 496 aaKnown RBP9.41□□□□□ -0.9
TCOF1-205ENST00000439160 RBMY1CP0DJD4 496 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 GAGE6Q13070 117 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 TMEM141Q96I45 108 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 ATG2AQ2TAZ0 1938 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 A0A1W2PPR1 153 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 DNAJC9-AS1A6NH13 148 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 VWC2LB2RUY7 222 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 F8VRH5 84 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 MTURNQ8N3F0 131 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 FLNBO75369 2602 aaKnown RBP9.41□□□□□ -0.9
TCOF1-205ENST00000439160 A0A1B0GV72 72 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 IGF1P05019 195 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 Q8N1Y9 231 aa9.41□□□□□ -0.9
TCOF1-205ENST00000439160 IGHG4P01861 327 aa9.4□□□□□ -0.9
TCOF1-205ENST00000439160 APOC4P55056 127 aa9.4□□□□□ -0.9
TCOF1-205ENST00000439160 C10orf99Q6UWK7 81 aa9.4□□□□□ -0.9
TCOF1-205ENST00000439160 IGLV2-8P01709 118 aa9.4□□□□□ -0.9
TCOF1-205ENST00000439160 ADAMTSL5Q6ZMM2 481 aa9.4□□□□□ -0.9
TCOF1-205ENST00000439160 MYMXA0A1B0GTQ4 84 aa9.4□□□□□ -0.91
TCOF1-205ENST00000439160 C19orf71A6NCJ1 209 aa9.4□□□□□ -0.91
TCOF1-205ENST00000439160 CCL25O15444 150 aa9.4□□□□□ -0.91
TCOF1-205ENST00000439160 ZNF80P51504 273 aaPredicted RBP9.4□□□□□ -0.91
TCOF1-205ENST00000439160 ZNF493Q6ZR52 646 aa9.4□□□□□ -0.91
TCOF1-205ENST00000439160 SIGMAR1Q99720 223 aa9.4□□□□□ -0.91
TCOF1-205ENST00000439160 TMEM243Q9BU79 118 aa9.4□□□□□ -0.91
TCOF1-205ENST00000439160 DLX4Q92988 240 aaPredicted RBP9.39□□□□□ -0.91
TCOF1-205ENST00000439160 YPEL4Q96NS1 127 aa9.39□□□□□ -0.91
TCOF1-205ENST00000439160 SS18Q15532 418 aa9.39□□□□□ -0.91
TCOF1-205ENST00000439160 TTC32Q5I0X7 151 aa9.39□□□□□ -0.91
TCOF1-205ENST00000439160 TMEM89A2RUT3 159 aa9.38□□□□□ -0.91
TCOF1-205ENST00000439160 BVES-AS1Q5T3Y7 98 aa9.38□□□□□ -0.91
TCOF1-205ENST00000439160 PGPEP1Q9NXJ5 209 aa9.38□□□□□ -0.91
TCOF1-205ENST00000439160 CPAMD8Q8IZJ3 1885 aa9.38□□□□□ -0.91
TCOF1-205ENST00000439160 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.38□□□□□ -0.91
TCOF1-205ENST00000439160 PRSS29PA6NIE9 313 aa9.38□□□□□ -0.91
TCOF1-205ENST00000439160 SUMO4Q6EEV6 95 aa9.38□□□□□ -0.91
TCOF1-205ENST00000439160 UBE2DNLQ8IWF7 75 aa9.38□□□□□ -0.91
TCOF1-205ENST00000439160 LRRC75A-AS1Q8N1F1 130 aa9.38□□□□□ -0.91
TCOF1-205ENST00000439160 COL4A2P08572 1712 aa9.38□□□□□ -0.91
TCOF1-205ENST00000439160 COX8AP10176 69 aa9.37□□□□□ -0.91
TCOF1-205ENST00000439160 Q6YL49 198 aa9.37□□□□□ -0.91
TCOF1-205ENST00000439160 A0A0J9YY99 117 aa9.37□□□□□ -0.91
TCOF1-205ENST00000439160 HIST2H2BDQ6DRA6 164 aa9.37□□□□□ -0.91
TCOF1-205ENST00000439160 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.36□□□□□ -0.91
TCOF1-205ENST00000439160 IGKV2-29A2NJV5 120 aaPredicted RBP9.36□□□□□ -0.91
TCOF1-205ENST00000439160 SRSF2Q01130 221 aaKnown RBP9.36□□□□□ -0.91
TCOF1-205ENST00000439160 TRANK1O15050 2925 aa9.36□□□□□ -0.91
TCOF1-205ENST00000439160 S100A7L2Q5SY68 101 aa9.36□□□□□ -0.91
TCOF1-205ENST00000439160 TRAV8-2A0A0B4J237 113 aa9.36□□□□□ -0.91
TCOF1-205ENST00000439160 A0A0J9YX75 114 aa9.36□□□□□ -0.91
TCOF1-205ENST00000439160 CLPSL1A2RUU4 121 aa9.36□□□□□ -0.91
TCOF1-205ENST00000439160 C4orf3Q8WVX3 66 aa9.36□□□□□ -0.91
TCOF1-205ENST00000439160 MLST8Q9BVC4 326 aa9.36□□□□□ -0.91
TCOF1-205ENST00000439160 MDFICQ9P1T7 246 aa9.36□□□□□ -0.91
TCOF1-205ENST00000439160 CTRLP40313 264 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 RNASE8Q8TDE3 154 aaKnown RBP9.35□□□□□ -0.91
TCOF1-205ENST00000439160 JPT2Q9H910 190 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 Q8N6K4 173 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 CLPSL2Q6UWE3 100 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 Q6ZS46 218 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 ZFAND3Q9H8U3 227 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 SCGB1A1P11684 91 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 PFN2P35080 140 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 ETDBQ3ZM63 59 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 PIFOQ8TCI5 191 aa9.35□□□□□ -0.91
TCOF1-205ENST00000439160 TRBV6-1A0A0K0K1D8 114 aa9.34□□□□□ -0.91
TCOF1-205ENST00000439160 C9orf66Q5T8R8 295 aa9.34□□□□□ -0.91
TCOF1-205ENST00000439160 NDUFA12Q9UI09 145 aa9.34□□□□□ -0.91
TCOF1-205ENST00000439160 K7EP13 123 aa9.34□□□□□ -0.91
TCOF1-205ENST00000439160 PCP2Q8IVA1 136 aa9.34□□□□□ -0.91
TCOF1-205ENST00000439160 MRAPQ8TCY5 172 aa9.34□□□□□ -0.91
TCOF1-205ENST00000439160 AVPP01185 164 aa9.34□□□□□ -0.91
TCOF1-205ENST00000439160 RHOHQ15669 191 aa9.34□□□□□ -0.91
TCOF1-205ENST00000439160 GATD1Q8NB37 220 aa9.34□□□□□ -0.91
TCOF1-205ENST00000439160 C9orf118A6NHY6 69 aa9.33□□□□□ -0.92
TCOF1-205ENST00000439160 ESM1Q9NQ30 184 aa9.33□□□□□ -0.92
TCOF1-205ENST00000439160 ANKRD17O75179 2603 aaKnown RBP9.33□□□□□ -0.92
TCOF1-205ENST00000439160 KRTAP10-9P60411 292 aa9.33□□□□□ -0.92
TCOF1-205ENST00000439160 J3QQQ9 107 aa9.33□□□□□ -0.92
TCOF1-205ENST00000439160 K7ERJ3 54 aa9.32□□□□□ -0.92
TCOF1-205ENST00000439160 SLC25A20O43772 301 aa9.32□□□□□ -0.92
TCOF1-205ENST00000439160 ANGP03950 147 aaKnown RBP9.32□□□□□ -0.92
TCOF1-205ENST00000439160 MYCNOSP40205 109 aa9.32□□□□□ -0.92
TCOF1-205ENST00000439160 SPINK8P0C7L1 97 aa9.32□□□□□ -0.92
TCOF1-205ENST00000439160 RPL39P62891 51 aaKnown RBP9.32□□□□□ -0.92
TCOF1-205ENST00000439160 GDF5OSQ5U4N7 250 aa9.32□□□□□ -0.92
TCOF1-205ENST00000439160 ANKRD39Q53RE8 183 aa9.32□□□□□ -0.92
TCOF1-205ENST00000439160 ZFP2Q6ZN57 461 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms