RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 IGKV2-24A0A0C4DH68 120 aa11.86□□□□□ -0.51
PTPRF-206ENST00000429895 PATE2Q6UY27 113 aa11.86□□□□□ -0.51
PTPRF-206ENST00000429895 DYSFO75923 2080 aa11.86□□□□□ -0.51
PTPRF-206ENST00000429895 LRCOL1A6NCL2 159 aa11.86□□□□□ -0.51
PTPRF-206ENST00000429895 TRBV12-3P01733 135 aa11.86□□□□□ -0.51
PTPRF-206ENST00000429895 A0A1B0GX51 115 aa11.85□□□□□ -0.51
PTPRF-206ENST00000429895 A4D1N5 150 aa11.85□□□□□ -0.51
PTPRF-206ENST00000429895 RIF1Q5UIP0 2472 aaKnown RBP11.85□□□□□ -0.51
PTPRF-206ENST00000429895 MP68P56378 58 aa11.85□□□□□ -0.51
PTPRF-206ENST00000429895 Q8N7P7 452 aa11.85□□□□□ -0.51
PTPRF-206ENST00000429895 H0Y9J4 135 aa11.84□□□□□ -0.51
PTPRF-206ENST00000429895 HIGD2BQ4VC39 106 aa11.84□□□□□ -0.51
PTPRF-206ENST00000429895 DNAJC9-AS1A6NH13 148 aa11.84□□□□□ -0.51
PTPRF-206ENST00000429895 HEATR5AQ86XA9 2040 aa11.84□□□□□ -0.51
PTPRF-206ENST00000429895 C10orf91Q5T1B1 145 aa11.83□□□□□ -0.51
PTPRF-206ENST00000429895 H0YGX0 51 aa11.83□□□□□ -0.52
PTPRF-206ENST00000429895 SPANXDQ9BXN6 97 aa11.83□□□□□ -0.52
PTPRF-206ENST00000429895 WI2-2373I1.2A0A1W2PRP0 233 aa11.83□□□□□ -0.52
PTPRF-206ENST00000429895 TMEM61Q8N0U2 210 aa11.83□□□□□ -0.52
PTPRF-206ENST00000429895 GTSF1Q8WW33 167 aa11.82□□□□□ -0.52
PTPRF-206ENST00000429895 MYLKQ15746 1914 aa11.82□□□□□ -0.52
PTPRF-206ENST00000429895 SPATA25Q9BR10 227 aa11.82□□□□□ -0.52
PTPRF-206ENST00000429895 DAZAP2Q15038 168 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-206ENST00000429895 MDFICQ9P1T7 246 aa11.82□□□□□ -0.52
PTPRF-206ENST00000429895 EML6Q6ZMW3 1958 aa11.81□□□□□ -0.52
PTPRF-206ENST00000429895 LECT2O14960 151 aa11.81□□□□□ -0.52
PTPRF-206ENST00000429895 C11orf45Q8TAV5 145 aa11.81□□□□□ -0.52
PTPRF-206ENST00000429895 TEX22C9J3V5 150 aa11.81□□□□□ -0.52
PTPRF-206ENST00000429895 UNQ9165/PRO28630Q6UXU0 137 aa11.81□□□□□ -0.52
PTPRF-206ENST00000429895 DIRC1Q969H9 104 aa11.81□□□□□ -0.52
PTPRF-206ENST00000429895 TSC2P49815 1807 aa11.81□□□□□ -0.52
PTPRF-206ENST00000429895 PSMB8P28062 276 aa11.8□□□□□ -0.52
PTPRF-206ENST00000429895 RLFQ13129 1914 aa11.8□□□□□ -0.52
PTPRF-206ENST00000429895 GTF3C1Q12789 2109 aa11.8□□□□□ -0.52
PTPRF-206ENST00000429895 ANKRD39Q53RE8 183 aa11.8□□□□□ -0.52
PTPRF-206ENST00000429895 CLEC2BQ92478 149 aa11.8□□□□□ -0.52
PTPRF-206ENST00000429895 B9D2Q9BPU9 175 aa11.8□□□□□ -0.52
PTPRF-206ENST00000429895 NOTCH3Q9UM47 2321 aa11.8□□□□□ -0.52
PTPRF-206ENST00000429895 GPHB5Q86YW7 130 aa11.8□□□□□ -0.52
PTPRF-206ENST00000429895 TTTY13Q9BZ97 58 aa11.8□□□□□ -0.52
PTPRF-206ENST00000429895 RNF183Q96D59 192 aa11.79□□□□□ -0.52
PTPRF-206ENST00000429895 PLXNA2O75051 1894 aa11.79□□□□□ -0.52
PTPRF-206ENST00000429895 GPR179Q6PRD1 2367 aa11.79□□□□□ -0.52
PTPRF-206ENST00000429895 K7EMT4 169 aa11.79□□□□□ -0.52
PTPRF-206ENST00000429895 NCKAP5O14513 1909 aa11.79□□□□□ -0.52
PTPRF-206ENST00000429895 MIR7-3HGQ8N6C7 128 aa11.79□□□□□ -0.52
PTPRF-206ENST00000429895 Q8NFD4 153 aa11.79□□□□□ -0.52
PTPRF-206ENST00000429895 A0A0B4J2C4 111 aa11.79□□□□□ -0.52
PTPRF-206ENST00000429895 CEMP1Q6PRD7 247 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-206ENST00000429895 E7EUB6 86 aa11.78□□□□□ -0.52
PTPRF-206ENST00000429895 SPTAN1Q13813 2472 aaKnown RBP11.78□□□□□ -0.52
PTPRF-206ENST00000429895 A0A096LNI7 61 aa11.78□□□□□ -0.52
PTPRF-206ENST00000429895 CDPF1Q6NVV7 123 aa11.78□□□□□ -0.52
PTPRF-206ENST00000429895 TOMM6Q96B49 74 aa11.78□□□□□ -0.52
PTPRF-206ENST00000429895 MAP6D1Q9H9H5 199 aa11.78□□□□□ -0.52
PTPRF-206ENST00000429895 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.78□□□□□ -0.524e-7■■■□□ 15.9
PTPRF-206ENST00000429895 SIRPDQ9H106 197 aa11.78□□□□□ -0.52
PTPRF-206ENST00000429895 IGF2-ASQ6U949 168 aa11.78□□□□□ -0.52
PTPRF-206ENST00000429895 TMEM263Q8WUH6 116 aaKnown RBP11.78□□□□□ -0.52
PTPRF-206ENST00000429895 TRAV26-1A0A087WT03 109 aa11.77□□□□□ -0.52
PTPRF-206ENST00000429895 KRTAP27-1Q3LI81 207 aa11.77□□□□□ -0.52
PTPRF-206ENST00000429895 ACYP1P07311 99 aa11.77□□□□□ -0.52
PTPRF-206ENST00000429895 SS18L2Q9UHA2 77 aa11.77□□□□□ -0.53
PTPRF-206ENST00000429895 WISP2O76076 250 aa11.77□□□□□ -0.53
PTPRF-206ENST00000429895 PRO0255Q9UI72 69 aa11.77□□□□□ -0.53
PTPRF-206ENST00000429895 NUPR1O60356 82 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 P0DMU3 169 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 FAM231AP0DMU4 169 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 FAM231CP0DMU5 169 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 IL15RAQ13261 267 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 B5MCH6 92 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 NBASA2RRP1 2371 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 CXCL5P42830 114 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 FAM110AQ9BQ89 295 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 HIGD2AQ9BW72 106 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 LGALS9O00182 355 aa11.76□□□□□ -0.53
PTPRF-206ENST00000429895 LINC01545Q5VT33 79 aa11.75□□□□□ -0.53
PTPRF-206ENST00000429895 A0A1W2PNU3 283 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-206ENST00000429895 A6NDX4 124 aa11.75□□□□□ -0.53
PTPRF-206ENST00000429895 TP53TG3Q9ULZ0 132 aa11.75□□□□□ -0.53
PTPRF-206ENST00000429895 INAFM1C9JVW0 142 aa11.74□□□□□ -0.53
PTPRF-206ENST00000429895 IGKV4-1P06312 121 aa11.74□□□□□ -0.53
PTPRF-206ENST00000429895 FAM167A-AS1Q96KT0 104 aa11.74□□□□□ -0.53
PTPRF-206ENST00000429895 LINC01620Q4KN68 170 aa11.74□□□□□ -0.53
PTPRF-206ENST00000429895 ODF3L1Q8IXM7 274 aa11.74□□□□□ -0.53
PTPRF-206ENST00000429895 LINC00269Q8N2A0 174 aa11.74□□□□□ -0.53
PTPRF-206ENST00000429895 IL17DQ8TAD2 202 aa11.74□□□□□ -0.53
PTPRF-206ENST00000429895 INSL3P51460 131 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 IGKV2D-26A0A0A0MRZ7 120 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 A0A0J9YX75 114 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 COX7BP24311 80 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 FXYD2P54710 66 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 HIST2H2BDQ6DRA6 164 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 C11orf86A6NJI1 115 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 SEC61GP60059 68 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 C19orf84I3L1E1 186 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 Q6ZUT4 128 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 NFE4Q86UQ8 179 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 MALRD1Q5VYJ5 2156 aa11.73□□□□□ -0.53
PTPRF-206ENST00000429895 IGLV1-47P01700 117 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms