RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RBMY1FQ15415 496 aaKnown RBP7.55□□□□□ -1.2
USP54-205ENST00000424265 LAMA3Q16787 3333 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 U3KQE9 123 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 F8VRH5 84 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 TRAV3A0A0B4J244 114 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 HIST1H4AP62805 103 aaKnown RBP7.54□□□□□ -1.2
USP54-205ENST00000424265 CLEC19AQ6UXS0 136 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 Q86TA4 180 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 ZNF292O60281 2723 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 DNAL4O96015 105 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 PRSS2P07478 247 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 CXCL5P42830 114 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 CEMP1Q6PRD7 247 aaPredicted RBP7.54□□□□□ -1.2
USP54-205ENST00000424265 PLEKHB2Q96CS7 222 aa7.54□□□□□ -1.2
USP54-205ENST00000424265 RBM3P98179 157 aaKnown RBP7.53□□□□□ -1.2
USP54-205ENST00000424265 C15orf32Q32M92 178 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 C10orf55Q5SWW7 151 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 IGHV4-38-2P0DP08 117 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 MORN5Q5VZ52 161 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 IL17DQ8TAD2 202 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 FAM19A4Q96LR4 140 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 HHLA3Q9XRX5 114 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 SNRPD3P62318 126 aaKnown RBP7.53□□□□□ -1.2
USP54-205ENST00000424265 NSUN5P1Q3KNT7 163 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 ATP6V0E1O15342 81 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 PAPPA-AS1Q5QFB9 102 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 SLC50A1Q9BRV3 221 aa7.53□□□□□ -1.2
USP54-205ENST00000424265 SERP1Q9Y6X1 66 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 C5orf42Q9H799 3197 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 BPTFQ12830 3046 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 PMAIP1Q13794 54 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 EBI3Q14213 229 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 Q6ZPA2 131 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 WI2-2373I1.2A0A1W2PRP0 233 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 RPL18AQ02543 176 aaKnown RBP7.52□□□□□ -1.21
USP54-205ENST00000424265 SHANK2-AS3Q9BTD1 123 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 TRAV12-2A0A075B6T6 113 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 NDUFC2-KCTD14E9PQ53 114 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 P0DMU3 169 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 FAM231AP0DMU4 169 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 FAM231CP0DMU5 169 aa7.52□□□□□ -1.21
USP54-205ENST00000424265 CRIP2P52943 208 aaPredicted RBP7.52□□□□□ -1.21
USP54-205ENST00000424265 SMIM26A0A096LP01 95 aa7.51□□□□□ -1.21
USP54-205ENST00000424265 S100A7L2Q5SY68 101 aa7.51□□□□□ -1.21
USP54-205ENST00000424265 Q8N8P6 123 aa7.51□□□□□ -1.21
USP54-205ENST00000424265 A0A1W2PPR1 153 aa7.51□□□□□ -1.21
USP54-205ENST00000424265 A6NDX4 124 aa7.51□□□□□ -1.21
USP54-205ENST00000424265 UBE2D1P51668 147 aa7.51□□□□□ -1.21
USP54-205ENST00000424265 ORMDL2Q53FV1 153 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 PRIMA1Q86XR5 153 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 HIVEP3Q5T1R4 2406 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 TANC2Q9HCD6 1990 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 A0A096LNJ9 63 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 C19orf71A6NCJ1 209 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 LY6LH3BQJ8 138 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 IGHV4-59P01825 116 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 LINC00205P59089 165 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 PRSS46E5RG02 174 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 INAFM2P0DMQ5 153 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 Q5XG85 94 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 PIP4P2Q8N4L2 257 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 RNF182Q8N6D2 247 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 C5orf56Q8N8D9 126 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 ZMAT4Q9H898 229 aa7.5□□□□□ -1.21
USP54-205ENST00000424265 SRRM4A7MD48 611 aaKnown RBP7.5□□□□□ -1.21
USP54-205ENST00000424265 FAM53AQ6NSI3 398 aaPredicted RBP7.5□□□□□ -1.21
USP54-205ENST00000424265 IGLV2-14P01704 120 aa7.49□□□□□ -1.21
USP54-205ENST00000424265 Q8N9W7 124 aa7.49□□□□□ -1.21
USP54-205ENST00000424265 DPH3P1Q9H4G8 78 aa7.49□□□□□ -1.21
USP54-205ENST00000424265 CIRBPQ14011 172 aaKnown RBP7.49□□□□□ -1.21
USP54-205ENST00000424265 Q6YL49 198 aa7.49□□□□□ -1.21
USP54-205ENST00000424265 IGHV3-11P01762 117 aa7.49□□□□□ -1.21
USP54-205ENST00000424265 ZNF22P17026 224 aaPredicted RBP7.49□□□□□ -1.21
USP54-205ENST00000424265 IGHG2P01859 326 aa7.48□□□□□ -1.21
USP54-205ENST00000424265 LINC00322Q6ZN03 302 aaPredicted RBP7.48□□□□□ -1.21
USP54-205ENST00000424265 IGLV2-23P01705 113 aa7.48□□□□□ -1.21
USP54-205ENST00000424265 EIF4EBP1Q13541 118 aaPredicted RBP7.48□□□□□ -1.21
USP54-205ENST00000424265 TIRAPP58753 221 aa7.48□□□□□ -1.21
USP54-205ENST00000424265 RHOHQ15669 191 aa7.48□□□□□ -1.21
USP54-205ENST00000424265 AKAP6Q13023 2319 aa7.48□□□□□ -1.21
USP54-205ENST00000424265 THAP8Q8NA92 274 aa7.48□□□□□ -1.21
USP54-205ENST00000424265 FXYD5Q96DB9 178 aa7.48□□□□□ -1.21
USP54-205ENST00000424265 C11orf68Q9H3H3 251 aaKnown RBP7.48□□□□□ -1.21
USP54-205ENST00000424265 IGHV7-81A0A0B4J1V7 117 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 NDUFA4O00483 81 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 WT1-ASQ06250 92 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 C9orf139Q6ZV77 190 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 TPSG1Q9NRR2 321 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 PRR14LQ5THK1 2151 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 TP53TG1Q9Y2A0 90 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 IGHV3-23P01764 117 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 LYPD1Q8N2G4 141 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 C1orf159Q96HA4 380 aa7.47□□□□□ -1.21
USP54-205ENST00000424265 DAZ1Q9NQZ3 744 aaKnown RBP7.47□□□□□ -1.21
USP54-205ENST00000424265 KLHL30-AS1Q8NEE0 82 aa7.46□□□□□ -1.21
USP54-205ENST00000424265 ICOSQ9Y6W8 199 aa7.46□□□□□ -1.21
USP54-205ENST00000424265 WNK2Q9Y3S1 2297 aa7.46□□□□□ -1.21
USP54-205ENST00000424265 IGKV3D-7A0A0C4DH55 119 aa7.46□□□□□ -1.21
USP54-205ENST00000424265 P0C879 139 aa7.46□□□□□ -1.21
USP54-205ENST00000424265 LINC01561Q8N1V8 128 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms