RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PPBPP02775 128 aa12.3□□□□□ -0.44
CCDC28B-202ENST00000421922 S100A6P06703 90 aa12.3□□□□□ -0.44
CCDC28B-202ENST00000421922 Q6ZTI0 123 aa12.3□□□□□ -0.44
CCDC28B-202ENST00000421922 MRAPQ8TCY5 172 aa12.3□□□□□ -0.44
CCDC28B-202ENST00000421922 RASL10AQ92737 203 aa12.3□□□□□ -0.44
CCDC28B-202ENST00000421922 MRAP2Q96G30 205 aa12.3□□□□□ -0.44
CCDC28B-202ENST00000421922 OVOL2Q9BRP0 275 aa12.3□□□□□ -0.44
CCDC28B-202ENST00000421922 GAGE12BA1L429 117 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 PLAC8L1A1L4L8 177 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 D6R8Y8 96 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST1H2BKO60814 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 GAGE7O76087 117 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST1H2BJP06899 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 GAGE12FP0CL80 117 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 GAGE12GP0CL81 117 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 GAGE12IP0CL82 117 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST1H2BOP23527 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST1H2BBP33778 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST1H2BDP58876 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST1H2BCP62807 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST2H2BEQ16778 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 OR4C5Q8NGB2 326 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST1H2BHQ93079 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 RNF185Q96GF1 192 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST1H2BNQ99877 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 HIST1H2BMQ99879 126 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 SPATA25Q9BR10 227 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 RETNQ9HD89 108 aa12.29□□□□□ -0.44
CCDC28B-202ENST00000421922 NCR2O95944 276 aa12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 DEFA6Q01524 100 aa12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 PRELID3AQ96N28 172 aa12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 LYRM9A8MSI8 78 aa12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 PHOX2AO14813 284 aa12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 RS1O15537 224 aa12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 CFAP126Q5VTH2 177 aa12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 Q8NAQ8 132 aa12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 ALKBH7Q9BT30 221 aaPredicted RBP12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 SAMD10Q9BYL1 202 aa12.28□□□□□ -0.44
CCDC28B-202ENST00000421922 TRAV4A0A0B4J268 109 aa12.27□□□□□ -0.45
CCDC28B-202ENST00000421922 TEX48A0A1B0GUV7 120 aa12.27□□□□□ -0.45
CCDC28B-202ENST00000421922 SMKR1H3BMG3 65 aa12.27□□□□□ -0.45
CCDC28B-202ENST00000421922 DEFB4AO15263 64 aa12.27□□□□□ -0.45
CCDC28B-202ENST00000421922 BAGE3Q86Y29 109 aa12.27□□□□□ -0.45
CCDC28B-202ENST00000421922 IGHV3-73A0A0B4J1V6 119 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 TRAV26-2A0A0B4J265 109 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 H7C1H1 209 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 PPP1R17O96001 155 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 CRYGDP07320 174 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 DEFB130BP0DP73 79 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 DEFB130AP0DP74 79 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 NDUFA6P56556 154 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 FAM222AQ5U5X8 452 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 SBSPONQ8IVN8 264 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 ZMAT4Q9H898 229 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 LAMTOR2Q9Y2Q5 125 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 KIF25-AS1Q9Y6Z4 181 aa12.26□□□□□ -0.45
CCDC28B-202ENST00000421922 IGHV3-53P01767 116 aa12.25□□□□□ -0.45
CCDC28B-202ENST00000421922 OR10J3Q5JRS4 329 aa12.25□□□□□ -0.45
CCDC28B-202ENST00000421922 SUMO4Q6EEV6 95 aa12.25□□□□□ -0.45
CCDC28B-202ENST00000421922 ZFP2Q6ZN57 461 aa12.25□□□□□ -0.45
CCDC28B-202ENST00000421922 U3KQK5 164 aa12.25□□□□□ -0.45
CCDC28B-202ENST00000421922 DNAH3Q8TD57 4116 aa12.25□□□□□ -0.45
CCDC28B-202ENST00000421922 PRKDCP78527 4128 aaKnown RBP12.25□□□□□ -0.45
CCDC28B-202ENST00000421922 CIDEAO60543 219 aa12.24□□□□□ -0.45
CCDC28B-202ENST00000421922 SPART-AS1P0CW21 52 aa12.24□□□□□ -0.45
CCDC28B-202ENST00000421922 DAD1P61803 113 aa12.24□□□□□ -0.45
CCDC28B-202ENST00000421922 MAP1LC3AQ9H492 121 aa12.24□□□□□ -0.45
CCDC28B-202ENST00000421922 NBEAL2Q6ZNJ1 2754 aa12.24□□□□□ -0.45
CCDC28B-202ENST00000421922 NACAE9PAV3 2078 aa12.23□□□□□ -0.45
CCDC28B-202ENST00000421922 POM121L12Q8N7R1 296 aa12.23□□□□□ -0.45
CCDC28B-202ENST00000421922 C18orf32Q8TCD1 76 aa12.23□□□□□ -0.45
CCDC28B-202ENST00000421922 DKK2Q9UBU2 259 aa12.23□□□□□ -0.45
CCDC28B-202ENST00000421922 TRGV4A0A0C4DH28 118 aa12.22□□□□□ -0.45
CCDC28B-202ENST00000421922 TNFRSF6BO95407 300 aa12.22□□□□□ -0.45
CCDC28B-202ENST00000421922 LINC00315P59091 139 aa12.22□□□□□ -0.45
CCDC28B-202ENST00000421922 TM2D3Q9BRN9 247 aa12.22□□□□□ -0.45
CCDC28B-202ENST00000421922 NPYP01303 97 aa12.21□□□□□ -0.45
CCDC28B-202ENST00000421922 Q0VG73 95 aa12.21□□□□□ -0.45
CCDC28B-202ENST00000421922 IQCJQ1A5X6 159 aa12.21□□□□□ -0.45
CCDC28B-202ENST00000421922 ZNF479Q96JC4 524 aa12.21□□□□□ -0.45
CCDC28B-202ENST00000421922 C11orf68Q9H3H3 251 aaKnown RBP12.21□□□□□ -0.45
CCDC28B-202ENST00000421922 LOC389332A0A1B0GUA5 103 aa12.2□□□□□ -0.46
CCDC28B-202ENST00000421922 GATA1P15976 413 aaPredicted RBP12.2□□□□□ -0.46
CCDC28B-202ENST00000421922 LINC00612Q8N6U2 182 aa12.2□□□□□ -0.46
CCDC28B-202ENST00000421922 PRSS3P2Q8NHM4 247 aa12.2□□□□□ -0.46
CCDC28B-202ENST00000421922 UFSP1Q6NVU6 142 aa12.2□□□□□ -0.46
CCDC28B-202ENST00000421922 RNASEKQ6P5S7 137 aaKnown RBP12.2□□□□□ -0.46
CCDC28B-202ENST00000421922 FA2HQ7L5A8 372 aa12.2□□□□□ -0.46
CCDC28B-202ENST00000421922 RPL39LQ96EH5 51 aaKnown RBP12.2□□□□□ -0.46
CCDC28B-202ENST00000421922 ST20Q9HBF5 79 aa12.2□□□□□ -0.46
CCDC28B-202ENST00000421922 PMCHP20382 165 aa12.19□□□□□ -0.46
CCDC28B-202ENST00000421922 NRACQ8N912 160 aa12.19□□□□□ -0.46
CCDC28B-202ENST00000421922 C18orf15Q96N68 181 aa12.19□□□□□ -0.46
CCDC28B-202ENST00000421922 B9D2Q9BPU9 175 aa12.19□□□□□ -0.46
CCDC28B-202ENST00000421922 CELA1Q9UNI1 258 aa12.19□□□□□ -0.46
CCDC28B-202ENST00000421922 M0QY20 66 aa12.18□□□□□ -0.46
CCDC28B-202ENST00000421922 GAS8-AS1O95177 125 aa12.18□□□□□ -0.46
CCDC28B-202ENST00000421922 C20orf78Q9BR46 151 aa12.18□□□□□ -0.46
CCDC28B-202ENST00000421922 EDA2RQ9HAV5 297 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms