RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 CLLU1Q5K131 121 aa12.85□□□□□ -0.35
PTCD3-204ENST00000418628 Q6ZR54 194 aa12.85□□□□□ -0.35
PTCD3-204ENST00000418628 CNFNQ9BYD5 112 aa12.85□□□□□ -0.35
PTCD3-204ENST00000418628 RPP21Q9H633 154 aaKnown RBP12.85□□□□□ -0.35
PTCD3-204ENST00000418628 XKRY2A2RUG3 117 aa12.84□□□□□ -0.35
PTCD3-204ENST00000418628 PEA15Q15121 130 aa12.84□□□□□ -0.35
PTCD3-204ENST00000418628 FAM74A3Q4VXF1 159 aa12.84□□□□□ -0.35
PTCD3-204ENST00000418628 FER1L6-AS1Q8NA97 138 aa12.84□□□□□ -0.35
PTCD3-204ENST00000418628 DNAH17Q9UFH2 4485 aa12.84□□□□□ -0.35
PTCD3-204ENST00000418628 SRIP30626 198 aa12.83□□□□□ -0.36
PTCD3-204ENST00000418628 CT83Q5H943 113 aa12.83□□□□□ -0.36
PTCD3-204ENST00000418628 NEGR1Q7Z3B1 354 aa12.83□□□□□ -0.36
PTCD3-204ENST00000418628 KIF25-AS1Q9Y6Z4 181 aa12.83□□□□□ -0.36
PTCD3-204ENST00000418628 A0A087WWL8 130 aa12.82□□□□□ -0.36
PTCD3-204ENST00000418628 A0A1W2PPQ1 181 aa12.82□□□□□ -0.36
PTCD3-204ENST00000418628 MUC21A0A0G2JKD1 596 aa12.81□□□□□ -0.36
PTCD3-204ENST00000418628 MUC21A0A140T8X8 626 aa12.81□□□□□ -0.36
PTCD3-204ENST00000418628 F2Z2F3 143 aa12.81□□□□□ -0.36
PTCD3-204ENST00000418628 TIRAPP58753 221 aa12.81□□□□□ -0.36
PTCD3-204ENST00000418628 FAM74A4Q5TZK3 123 aa12.81□□□□□ -0.36
PTCD3-204ENST00000418628 LYPD5Q6UWN5 251 aa12.81□□□□□ -0.36
PTCD3-204ENST00000418628 C14orf178Q8N769 122 aaPredicted RBP12.81□□□□□ -0.36
PTCD3-204ENST00000418628 GTSF1Q8WW33 167 aa12.81□□□□□ -0.36
PTCD3-204ENST00000418628 PRADC1Q9BSG0 188 aa12.81□□□□□ -0.36
PTCD3-204ENST00000418628 LINC00315P59091 139 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 RAB14P61106 215 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 RPL23P62829 140 aaKnown RBP12.8□□□□□ -0.36
PTCD3-204ENST00000418628 CACNG7P62955 275 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 SPANXN1Q5VSR9 72 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 WDR73Q6P4I2 378 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 SH2D6Q7Z4S9 175 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 ISOC2Q96AB3 205 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 OSTCQ9NRP0 149 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 Q9UF83 564 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 FAT2Q9NYQ8 4349 aa12.8□□□□□ -0.36
PTCD3-204ENST00000418628 GATCO43716 136 aaKnown RBP12.79□□□□□ -0.36
PTCD3-204ENST00000418628 LYZL1Q6UWQ5 148 aa12.79□□□□□ -0.36
PTCD3-204ENST00000418628 AP1S3Q96PC3 154 aa12.79□□□□□ -0.36
PTCD3-204ENST00000418628 NAT8Q9UHE5 227 aa12.79□□□□□ -0.36
PTCD3-204ENST00000418628 IGLV2-18A0A075B6J9 118 aa12.78□□□□□ -0.36
PTCD3-204ENST00000418628 FOXA3P55318 350 aaPredicted RBP12.78□□□□□ -0.36
PTCD3-204ENST00000418628 ERVFC1-1P60608 527 aa12.78□□□□□ -0.36
PTCD3-204ENST00000418628 TMEM241Q24JQ0 296 aa12.78□□□□□ -0.36
PTCD3-204ENST00000418628 MSRB1Q9NZV6 116 aa12.78□□□□□ -0.36
PTCD3-204ENST00000418628 NBDYA0A0U1RRE5 68 aa12.77□□□□□ -0.37
PTCD3-204ENST00000418628 RAB4BP61018 213 aa12.77□□□□□ -0.37
PTCD3-204ENST00000418628 TPPP3Q9BW30 176 aa12.77□□□□□ -0.37
PTCD3-204ENST00000418628 KRTAP1-5Q9BYS1 174 aa12.77□□□□□ -0.37
PTCD3-204ENST00000418628 Q9H8V8 135 aa12.77□□□□□ -0.37
PTCD3-204ENST00000418628 V9GYV3 84 aa12.77□□□□□ -0.37
PTCD3-204ENST00000418628 TRBV10-1A0A0K0K1A3 114 aa12.76□□□□□ -0.37
PTCD3-204ENST00000418628 A8MWL6 223 aa12.76□□□□□ -0.37
PTCD3-204ENST00000418628 SOHLH1Q5JUK2 328 aa12.76□□□□□ -0.37
PTCD3-204ENST00000418628 OR10G8Q8NGN5 311 aa12.76□□□□□ -0.37
PTCD3-204ENST00000418628 GFRA4Q9GZZ7 299 aa12.76□□□□□ -0.37
PTCD3-204ENST00000418628 FAM231BA6NCW3 169 aa12.75□□□□□ -0.37
PTCD3-204ENST00000418628 EPPK1P58107 5090 aaKnown RBP12.75□□□□□ -0.37
PTCD3-204ENST00000418628 M0R2N4 97 aa12.74□□□□□ -0.37
PTCD3-204ENST00000418628 NTF3P20783 257 aa12.74□□□□□ -0.37
PTCD3-204ENST00000418628 TSKUQ8WUA8 353 aa12.74□□□□□ -0.37
PTCD3-204ENST00000418628 HECTD4Q9Y4D8 3996 aa12.73□□□□□ -0.37
PTCD3-204ENST00000418628 TRGC1P0CF51 173 aa12.73□□□□□ -0.37
PTCD3-204ENST00000418628 ADIRFQ15847 76 aa12.73□□□□□ -0.37
PTCD3-204ENST00000418628 ZNF56Q15929 161 aa12.73□□□□□ -0.37
PTCD3-204ENST00000418628 ATP6V0E2Q8NHE4 81 aa12.73□□□□□ -0.37
PTCD3-204ENST00000418628 GTSF1LQ9H1H1 148 aa12.73□□□□□ -0.37
PTCD3-204ENST00000418628 GAGE12JA6NER3 117 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 RTL8CO15255 209 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 SIVA1O15304 175 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 EVI2AP22794 236 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 SSTP61278 116 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 GAGE1Q13065 139 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 GAGE4Q13068 117 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 GAGE5Q13069 117 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 GAGE13Q4V321 117 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 WFDC10BQ8IUB3 73 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 C15orf54Q8N8G6 183 aa12.72□□□□□ -0.37
PTCD3-204ENST00000418628 UBE2D3P61077 147 aa12.71□□□□□ -0.37
PTCD3-204ENST00000418628 UBE2D2P62837 147 aa12.71□□□□□ -0.37
PTCD3-204ENST00000418628 TTC32Q5I0X7 151 aa12.71□□□□□ -0.37
PTCD3-204ENST00000418628 NEXN-AS1Q8NBZ9 246 aa12.71□□□□□ -0.37
PTCD3-204ENST00000418628 DPH3P1Q9H4G8 78 aa12.71□□□□□ -0.37
PTCD3-204ENST00000418628 TRBV7-3A0A075B6L6 115 aa12.7□□□□□ -0.38
PTCD3-204ENST00000418628 HIGD1CA8MV81 97 aa12.7□□□□□ -0.38
PTCD3-204ENST00000418628 DNAH10OSP0CZ25 163 aa12.7□□□□□ -0.38
PTCD3-204ENST00000418628 SMIM17P0DL12 118 aa12.7□□□□□ -0.38
PTCD3-204ENST00000418628 LELP1Q5T871 98 aa12.7□□□□□ -0.38
PTCD3-204ENST00000418628 M0QY20 66 aa12.69□□□□□ -0.38
PTCD3-204ENST00000418628 UQCC3Q6UW78 93 aa12.69□□□□□ -0.38
PTCD3-204ENST00000418628 PGLYRP4Q96LB8 373 aa12.69□□□□□ -0.38
PTCD3-204ENST00000418628 BTF3P20290 206 aaKnown RBP12.68□□□□□ -0.38
PTCD3-204ENST00000418628 RPL36AP83881 106 aaKnown RBP12.68□□□□□ -0.38
PTCD3-204ENST00000418628 TWIST1Q15672 202 aa12.68□□□□□ -0.38
PTCD3-204ENST00000418628 SUMO4Q6EEV6 95 aa12.68□□□□□ -0.38
PTCD3-204ENST00000418628 RPL36ALQ969Q0 106 aaKnown RBP12.68□□□□□ -0.38
PTCD3-204ENST00000418628 PKD1P98161 4303 aa12.67□□□□□ -0.38
PTCD3-204ENST00000418628 SMIM27A0A1W2PRY6 76 aa12.67□□□□□ -0.38
PTCD3-204ENST00000418628 ADCYAP1P18509 176 aa12.67□□□□□ -0.38
PTCD3-204ENST00000418628 A0A1B0GUT8 65 aa12.66□□□□□ -0.38
PTCD3-204ENST00000418628 F5H697 171 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms