RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 IGHV3-30-5P0DP03 117 aa11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 NUP37Q8NFH4 326 aa11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 FANCD2OSQ96PS1 177 aa11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 IGHV3-64A0A075B6Q5 118 aa11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 S100A4P26447 101 aaKnown RBP11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 TSPEAR-AS2P59090 65 aa11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 SRSF2Q01130 221 aaKnown RBP11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 TIMD4Q96H15 378 aa11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 USP24Q9UPU5 2620 aa11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 F8W735 103 aaPredicted RBP11.21□□□□□ -0.61
NCKIPSD-204ENST00000416649 ELANEP08246 267 aa11.21□□□□□ -0.61
NCKIPSD-204ENST00000416649 PSMG3-AS1Q96PY0 264 aa11.21□□□□□ -0.61
NCKIPSD-204ENST00000416649 CHCHD5Q9BSY4 110 aa11.21□□□□□ -0.62
NCKIPSD-204ENST00000416649 NBR2O15453 112 aa11.2□□□□□ -0.62
NCKIPSD-204ENST00000416649 SLC50A1Q9BRV3 221 aa11.2□□□□□ -0.62
NCKIPSD-204ENST00000416649 ODF3Q96PU9 254 aa11.2□□□□□ -0.62
NCKIPSD-204ENST00000416649 CENPVL3A0A0U1RRI6 287 aa11.19□□□□□ -0.62
NCKIPSD-204ENST00000416649 CTSGP08311 255 aa11.19□□□□□ -0.62
NCKIPSD-204ENST00000416649 ZNF672Q499Z4 452 aaPredicted RBP11.19□□□□□ -0.62
NCKIPSD-204ENST00000416649 TP53TG1Q9Y2A0 90 aa11.19□□□□□ -0.62
NCKIPSD-204ENST00000416649 IGLV11-55A0A075B6I3 123 aa11.19□□□□□ -0.62
NCKIPSD-204ENST00000416649 CRYGDP07320 174 aa11.19□□□□□ -0.62
NCKIPSD-204ENST00000416649 LGALS3P17931 250 aaKnown RBP11.19□□□□□ -0.62
NCKIPSD-204ENST00000416649 ID1P41134 155 aa11.19□□□□□ -0.62
NCKIPSD-204ENST00000416649 ZNF56Q15929 161 aa11.19□□□□□ -0.62
NCKIPSD-204ENST00000416649 CELSR2Q9HCU4 2923 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 RPL39P62891 51 aaKnown RBP11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 LINC01620Q4KN68 170 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 SLC25A29Q8N8R3 303 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 PPDPFQ9H3Y8 114 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 USP9YO00507 2555 aaPredicted RBP11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 CSPG4Q6UVK1 2322 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 IGHV3-33P01772 117 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 IGF1P05019 195 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 OR10J6PQ8NGY7 276 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 PHLDA3Q9Y5J5 127 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 TNFRSF18Q9Y5U5 241 aa11.18□□□□□ -0.62
NCKIPSD-204ENST00000416649 NDPQ00604 133 aa11.17□□□□□ -0.62
NCKIPSD-204ENST00000416649 IGLV4-69A0A075B6H9 119 aa11.16□□□□□ -0.62
NCKIPSD-204ENST00000416649 H3BMM0 161 aa11.16□□□□□ -0.62
NCKIPSD-204ENST00000416649 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.16□□□□□ -0.62
NCKIPSD-204ENST00000416649 UBE2WQ96B02 151 aa11.16□□□□□ -0.62
NCKIPSD-204ENST00000416649 J3QQQ9 107 aa11.16□□□□□ -0.62
NCKIPSD-204ENST00000416649 GNLYP22749 145 aa11.16□□□□□ -0.62
NCKIPSD-204ENST00000416649 ATXN8Q156A1 80 aa11.16□□□□□ -0.62
NCKIPSD-204ENST00000416649 C2orf82Q6UX34 121 aa11.15□□□□□ -0.62
NCKIPSD-204ENST00000416649 ABCA12Q86UK0 2595 aa11.15□□□□□ -0.62
NCKIPSD-204ENST00000416649 EIF4EBP3O60516 100 aaPredicted RBP11.15□□□□□ -0.62
NCKIPSD-204ENST00000416649 PRR9Q5T870 116 aa11.15□□□□□ -0.62
NCKIPSD-204ENST00000416649 MUSTN1Q8IVN3 82 aa11.15□□□□□ -0.62
NCKIPSD-204ENST00000416649 DUX3Q96PT4 197 aa11.15□□□□□ -0.62
NCKIPSD-204ENST00000416649 DPH3P1Q9H4G8 78 aa11.15□□□□□ -0.62
NCKIPSD-204ENST00000416649 YAE1D1Q9NRH1 226 aa11.15□□□□□ -0.63
NCKIPSD-204ENST00000416649 TSHBP01222 138 aa11.14□□□□□ -0.63
NCKIPSD-204ENST00000416649 PRSS2P07478 247 aa11.14□□□□□ -0.63
NCKIPSD-204ENST00000416649 DEFB1P60022 68 aa11.14□□□□□ -0.63
NCKIPSD-204ENST00000416649 PMVKQ15126 192 aa11.14□□□□□ -0.63
NCKIPSD-204ENST00000416649 VPREB3Q9UKI3 123 aa11.14□□□□□ -0.63
NCKIPSD-204ENST00000416649 BUB3O43684 328 aa11.13□□□□□ -0.63
NCKIPSD-204ENST00000416649 Q6Q795 121 aa11.13□□□□□ -0.63
NCKIPSD-204ENST00000416649 ZNRF2Q8NHG8 242 aa11.13□□□□□ -0.63
NCKIPSD-204ENST00000416649 TMEM263Q8WUH6 116 aaKnown RBP11.13□□□□□ -0.63
NCKIPSD-204ENST00000416649 IGKV3-7A0A075B6H7 116 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 A0A1W2PPR1 153 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 ADARB2-AS1A8MUL3 147 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 PAPPA-AS1Q5QFB9 102 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 B9A039 149 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 F5H697 171 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 OPRPNQ99935 248 aaPredicted RBP11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 RBAKDNA6NC62 111 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 M0QXV9 152 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 LGALS9O00182 355 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 PTPN13Q12923 2485 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 ECSCRQ19T08 205 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 C15orf32Q32M92 178 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 RNF5Q99942 180 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 KAAG1Q9UBP8 84 aa11.12□□□□□ -0.63
NCKIPSD-204ENST00000416649 NPC2P61916 151 aa11.11□□□□□ -0.63
NCKIPSD-204ENST00000416649 C16orf92Q96LL3 132 aa11.11□□□□□ -0.63
NCKIPSD-204ENST00000416649 DPM3Q9P2X0 92 aa11.11□□□□□ -0.63
NCKIPSD-204ENST00000416649 IGHV4-4A0A075B6R2 117 aa11.11□□□□□ -0.63
NCKIPSD-204ENST00000416649 TRBV10-2A0A0K0K1G8 114 aa11.11□□□□□ -0.63
NCKIPSD-204ENST00000416649 TRIAP1O43715 76 aa11.11□□□□□ -0.63
NCKIPSD-204ENST00000416649 CLEC19AQ6UXS0 136 aa11.11□□□□□ -0.63
NCKIPSD-204ENST00000416649 C2CD3Q4AC94 2353 aa11.11□□□□□ -0.63
NCKIPSD-204ENST00000416649 SETD2Q9BYW2 2564 aaPredicted RBP11.1□□□□□ -0.63
NCKIPSD-204ENST00000416649 RNF223E7ERA6 249 aa11.1□□□□□ -0.63
NCKIPSD-204ENST00000416649 DOPEY1Q5JWR5 2465 aa11.1□□□□□ -0.63
NCKIPSD-204ENST00000416649 C19orf84I3L1E1 186 aa11.1□□□□□ -0.63
NCKIPSD-204ENST00000416649 GNRH2O43555 120 aa11.1□□□□□ -0.63
NCKIPSD-204ENST00000416649 PRB1P04280 392 aa11.1□□□□□ -0.63
NCKIPSD-204ENST00000416649 UBTD1Q9HAC8 227 aa11.1□□□□□ -0.63
NCKIPSD-204ENST00000416649 LINC00527Q9UJ94 153 aa11.1□□□□□ -0.63
NCKIPSD-204ENST00000416649 PRORYQ9H606 182 aa11.09□□□□□ -0.63
NCKIPSD-204ENST00000416649 ZNF256Q9Y2P7 627 aaPredicted RBP11.09□□□□□ -0.63
NCKIPSD-204ENST00000416649 FAM236AA0A1B0GUQ0 79 aa11.08□□□□□ -0.63
NCKIPSD-204ENST00000416649 FAM236BA0A1B0GV22 79 aa11.08□□□□□ -0.63
NCKIPSD-204ENST00000416649 CLEC2BQ92478 149 aa11.08□□□□□ -0.63
NCKIPSD-204ENST00000416649 AMELXQ99217 191 aa11.08□□□□□ -0.63
NCKIPSD-204ENST00000416649 JPT2Q9H910 190 aa11.08□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms