RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 KIR2DL4Q99706 377 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 JPT2Q9H910 190 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 IGKV3-7A0A075B6H7 116 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 TSPAN13O95857 204 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 TGFAP01135 160 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 IGHV3-11P01762 117 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 UBE2D1P51668 147 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 TSPEAR-AS2P59090 65 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 Q6ZS46 218 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 CDIP1Q9H305 208 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 ABCA2Q9BZC7 2435 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 LGALS9O00182 355 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 EDN2P20800 178 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 CFHR3Q02985 330 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 SCGB1D4Q6XE38 83 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 CHD8Q9HCK8 2581 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 IGLV4-69A0A075B6H9 119 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 TRBV27A0A0K0K1C4 114 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 C11orf86A6NJI1 115 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 H3BUX3 64 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 APOMO95445 188 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 PSMB2P49721 201 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 RPL39P62891 51 aaKnown RBP7.32□□□□□ -1.24
CD44-206ENST00000415148 SRSF9Q13242 221 aaKnown RBP eCLIP7.32□□□□□ -1.24
CD44-206ENST00000415148 CFAP126Q5VTH2 177 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 SUMO4Q6EEV6 95 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 C10orf105Q8TEF2 133 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 ZNF418Q8TF45 676 aaPredicted RBP7.32□□□□□ -1.24
CD44-206ENST00000415148 DCANP1Q8TF63 244 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 MRPL16Q9NX20 251 aaKnown RBP7.32□□□□□ -1.24
CD44-206ENST00000415148 TP53TG1Q9Y2A0 90 aa7.32□□□□□ -1.24
CD44-206ENST00000415148 IGHV4-61A0A0C4DH41 118 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 IGHV4-38-2P0DP08 117 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 FOXI1Q12951 378 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 LY6EQ16553 131 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 Q5PR19 223 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 SYT8Q8NBV8 401 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 CARD19Q96LW7 228 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 LOC107984156A0A0G2JMH3 177 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 C19orf84I3L1E1 186 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 BLCAPP62952 87 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 LYRM7Q5U5X0 104 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 ARL17AQ8IVW1 177 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 ATP6V0E2Q8NHE4 81 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 DLX4Q92988 240 aaPredicted RBP7.31□□□□□ -1.24
CD44-206ENST00000415148 C9orf85Q96MD7 179 aa7.31□□□□□ -1.24
CD44-206ENST00000415148 A0A0J9YY99 117 aa7.3□□□□□ -1.24
CD44-206ENST00000415148 MT-ATP8P03928 68 aa7.3□□□□□ -1.24
CD44-206ENST00000415148 CD7P09564 240 aa7.3□□□□□ -1.24
CD44-206ENST00000415148 ZNF876PQ49A33 203 aa7.3□□□□□ -1.24
CD44-206ENST00000415148 CELSR2Q9HCU4 2923 aa7.3□□□□□ -1.24
CD44-206ENST00000415148 TMEM89A2RUT3 159 aa7.3□□□□□ -1.24
CD44-206ENST00000415148 SDHAF1A6NFY7 115 aa7.3□□□□□ -1.24
CD44-206ENST00000415148 EIF4EBP3O60516 100 aaPredicted RBP7.3□□□□□ -1.24
CD44-206ENST00000415148 SRD5A1P18405 259 aa7.3□□□□□ -1.24
CD44-206ENST00000415148 IGHV3-16A0A0C4DH30 117 aa7.29□□□□□ -1.24
CD44-206ENST00000415148 F5H697 171 aa7.29□□□□□ -1.24
CD44-206ENST00000415148 RHOHQ15669 191 aa7.29□□□□□ -1.24
CD44-206ENST00000415148 SLC25A29Q8N8R3 303 aa7.29□□□□□ -1.24
CD44-206ENST00000415148 C1QTNF4Q9BXJ3 329 aa7.29□□□□□ -1.24
CD44-206ENST00000415148 CSMD2Q7Z408 3487 aa7.29□□□□□ -1.24
CD44-206ENST00000415148 TRAV12-3A0A0B4J271 114 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 TCL1BO95988 128 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 XGP55808 180 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 CKS1BP61024 79 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 UBE2D3P61077 147 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 UBE2D2P62837 147 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 NSUN5P1Q3KNT7 163 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 RNF152Q8N8N0 203 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 OPRPNQ99935 248 aaPredicted RBP7.28□□□□□ -1.24
CD44-206ENST00000415148 A0A087WWL8 130 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 MSMBP08118 114 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 PSMB8P28062 276 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 LY6DQ14210 128 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 NDUFA11Q86Y39 141 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 ZNRF2Q8NHG8 242 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 CCL19Q99731 98 aa7.28□□□□□ -1.24
CD44-206ENST00000415148 TRBV20-1A0A075B6N2 111 aa7.27□□□□□ -1.24
CD44-206ENST00000415148 A0A0J9YX75 114 aa7.27□□□□□ -1.24
CD44-206ENST00000415148 M0QY20 66 aa7.27□□□□□ -1.24
CD44-206ENST00000415148 CFC1BP0CG36 223 aa7.27□□□□□ -1.24
CD44-206ENST00000415148 CFC1P0CG37 223 aa7.27□□□□□ -1.24
CD44-206ENST00000415148 SNRPD3P62318 126 aaKnown RBP7.27□□□□□ -1.24
CD44-206ENST00000415148 TRPT1Q86TN4 253 aaKnown RBP7.27□□□□□ -1.24
CD44-206ENST00000415148 HIVEP3Q5T1R4 2406 aa7.27□□□□□ -1.25
CD44-206ENST00000415148 TRAV26-1A0A087WT03 109 aa7.27□□□□□ -1.25
CD44-206ENST00000415148 IGHV3-30P01768 117 aa7.27□□□□□ -1.25
CD44-206ENST00000415148 IGHV3-30-5P0DP03 117 aa7.27□□□□□ -1.25
CD44-206ENST00000415148 GATA3P23771 443 aa7.27□□□□□ -1.25
CD44-206ENST00000415148 AMELXQ99217 191 aa7.27□□□□□ -1.25
CD44-206ENST00000415148 PRORYQ9H606 182 aa7.27□□□□□ -1.25
CD44-206ENST00000415148 TMEM170BQ5T4T1 132 aa7.26□□□□□ -1.25
CD44-206ENST00000415148 VCX2Q9H322 139 aa7.26□□□□□ -1.25
CD44-206ENST00000415148 SORL1Q92673 2214 aa7.26□□□□□ -1.25
CD44-206ENST00000415148 IGHV1OR15-1A0A075B7D0 117 aa7.26□□□□□ -1.25
CD44-206ENST00000415148 A0A1B0GV72 72 aa7.26□□□□□ -1.25
CD44-206ENST00000415148 J3QQQ9 107 aa7.26□□□□□ -1.25
CD44-206ENST00000415148 K7EQG2 157 aa7.26□□□□□ -1.25
CD44-206ENST00000415148 LEPROTO15243 131 aa7.26□□□□□ -1.25
CD44-206ENST00000415148 GNLYP22749 145 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms