RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 GAGE13Q4V321 117 aa10.06□□□□□ -0.8
LIMS4-201ENST00000413601 ATP6V0E2Q8NHE4 81 aa10.06□□□□□ -0.8
LIMS4-201ENST00000413601 MED9Q9NWA0 146 aa10.06□□□□□ -0.8
LIMS4-201ENST00000413601 VAX2Q9UIW0 290 aa10.06□□□□□ -0.8
LIMS4-201ENST00000413601 MUC21A0A0G2JKD1 596 aa10.05□□□□□ -0.8
LIMS4-201ENST00000413601 MUC21A0A140T8X8 626 aa10.05□□□□□ -0.8
LIMS4-201ENST00000413601 CRYGDP07320 174 aa10.05□□□□□ -0.8
LIMS4-201ENST00000413601 CXCL1P09341 107 aa10.05□□□□□ -0.8
LIMS4-201ENST00000413601 EVI2AP22794 236 aa10.05□□□□□ -0.8
LIMS4-201ENST00000413601 GNG4P50150 75 aa10.05□□□□□ -0.8
LIMS4-201ENST00000413601 Q6ZRN7 208 aaPredicted RBP10.05□□□□□ -0.8
LIMS4-201ENST00000413601 OR10AG1Q8NH19 301 aa10.05□□□□□ -0.8
LIMS4-201ENST00000413601 GTSF1LQ9H1H1 148 aa10.05□□□□□ -0.8
LIMS4-201ENST00000413601 IGHV3-38A0A0C4DH36 116 aa10.04□□□□□ -0.8
LIMS4-201ENST00000413601 OR10J3Q5JRS4 329 aa10.04□□□□□ -0.8
LIMS4-201ENST00000413601 SSBP4Q9BWG4 385 aaPredicted RBP10.04□□□□□ -0.8
LIMS4-201ENST00000413601 TRBV20OR9-2A0A075B6H5 130 aa10.03□□□□□ -0.8
LIMS4-201ENST00000413601 TRAV8-6A0A0B4J262 113 aa10.03□□□□□ -0.8
LIMS4-201ENST00000413601 K7EP13 123 aa10.03□□□□□ -0.8
LIMS4-201ENST00000413601 SNAI2O43623 268 aa10.03□□□□□ -0.8
LIMS4-201ENST00000413601 LINC00694P0DN24 101 aa10.03□□□□□ -0.8
LIMS4-201ENST00000413601 TAGLN2P37802 199 aaKnown RBP10.03□□□□□ -0.8
LIMS4-201ENST00000413601 SSTP61278 116 aa10.03□□□□□ -0.8
LIMS4-201ENST00000413601 BLOC1S1P78537 153 aa10.03□□□□□ -0.8
LIMS4-201ENST00000413601 LELP1Q5T871 98 aa10.03□□□□□ -0.8
LIMS4-201ENST00000413601 DAZAP1Q96EP5 407 aaKnown RBP10.03□□□□□ -0.8
LIMS4-201ENST00000413601 MSRB1Q9NZV6 116 aa10.03□□□□□ -0.8
LIMS4-201ENST00000413601 OR5AL1P0C617 328 aa10.02□□□□□ -0.81
LIMS4-201ENST00000413601 GZMBP10144 247 aa10.02□□□□□ -0.81
LIMS4-201ENST00000413601 SPANXN1Q5VSR9 72 aa10.02□□□□□ -0.81
LIMS4-201ENST00000413601 SMIM12Q96EX1 92 aa10.02□□□□□ -0.81
LIMS4-201ENST00000413601 PKHD1P08F94 4074 aa10.01□□□□□ -0.81
LIMS4-201ENST00000413601 C19orf71A6NCJ1 209 aa10.01□□□□□ -0.81
LIMS4-201ENST00000413601 C16orf90A8MZG2 172 aa10.01□□□□□ -0.81
LIMS4-201ENST00000413601 LINC01556Q5JQF7 62 aa10.01□□□□□ -0.81
LIMS4-201ENST00000413601 SPATA12Q7Z6I5 190 aa10.01□□□□□ -0.81
LIMS4-201ENST00000413601 NFE4Q86UQ8 179 aa10.01□□□□□ -0.81
LIMS4-201ENST00000413601 OR2D3Q8NGH3 330 aa10.01□□□□□ -0.81
LIMS4-201ENST00000413601 RBFOX3A6NFN3 312 aa10□□□□□ -0.81
LIMS4-201ENST00000413601 IGHV3-30P01768 117 aa10□□□□□ -0.81
LIMS4-201ENST00000413601 IGHV3-33P01772 117 aa10□□□□□ -0.81
LIMS4-201ENST00000413601 IGHV3-30-3P0DP02 117 aa10□□□□□ -0.81
LIMS4-201ENST00000413601 IGHV3-30-5P0DP03 117 aa10□□□□□ -0.81
LIMS4-201ENST00000413601 C10orf126Q8N4M7 172 aa10□□□□□ -0.81
LIMS4-201ENST00000413601 LYPD6BQ8NI32 183 aa10□□□□□ -0.81
LIMS4-201ENST00000413601 P01737 135 aa9.99□□□□□ -0.81
LIMS4-201ENST00000413601 KRTAP10-2P60368 255 aa9.99□□□□□ -0.81
LIMS4-201ENST00000413601 RPS20P60866 119 aaKnown RBP9.99□□□□□ -0.81
LIMS4-201ENST00000413601 RAB4BP61018 213 aa9.99□□□□□ -0.81
LIMS4-201ENST00000413601 ZNF56Q15929 161 aa9.99□□□□□ -0.81
LIMS4-201ENST00000413601 FER1L6-AS1Q8NA97 138 aa9.99□□□□□ -0.81
LIMS4-201ENST00000413601 TPPP3Q9BW30 176 aa9.99□□□□□ -0.81
LIMS4-201ENST00000413601 BIN3Q9NQY0 253 aa9.99□□□□□ -0.81
LIMS4-201ENST00000413601 IGLC6P0CF74 106 aa9.98□□□□□ -0.81
LIMS4-201ENST00000413601 Q8N3U1 123 aa9.98□□□□□ -0.81
LIMS4-201ENST00000413601 KIAA1109Q2LD37 5005 aa9.97□□□□□ -0.81
LIMS4-201ENST00000413601 TRBV10-1A0A0K0K1A3 114 aa9.97□□□□□ -0.81
LIMS4-201ENST00000413601 IBA57-AS1B1ANH7 110 aa9.97□□□□□ -0.81
LIMS4-201ENST00000413601 RPL36AP83881 106 aaKnown RBP9.97□□□□□ -0.81
LIMS4-201ENST00000413601 NUDT10Q8NFP7 164 aa9.97□□□□□ -0.81
LIMS4-201ENST00000413601 OCC1Q8TAD7 63 aa9.97□□□□□ -0.81
LIMS4-201ENST00000413601 RPL36ALQ969Q0 106 aaKnown RBP9.97□□□□□ -0.81
LIMS4-201ENST00000413601 NUDT11Q96G61 164 aa9.97□□□□□ -0.81
LIMS4-201ENST00000413601 TRBV7-3A0A075B6L6 115 aa9.96□□□□□ -0.82
LIMS4-201ENST00000413601 A0A087WWC5 75 aa9.96□□□□□ -0.82
LIMS4-201ENST00000413601 XKRY2A2RUG3 117 aa9.96□□□□□ -0.82
LIMS4-201ENST00000413601 F5H697 171 aa9.96□□□□□ -0.82
LIMS4-201ENST00000413601 K7EN84 100 aa9.96□□□□□ -0.82
LIMS4-201ENST00000413601 ERVFC1-1P60608 527 aa9.96□□□□□ -0.82
LIMS4-201ENST00000413601 AP1S3Q96PC3 154 aa9.96□□□□□ -0.82
LIMS4-201ENST00000413601 Q9HAA7 133 aa9.96□□□□□ -0.82
LIMS4-201ENST00000413601 KIF25-AS1Q9Y6Z4 181 aa9.96□□□□□ -0.82
LIMS4-201ENST00000413601 TMEM250H0YL14 139 aa9.95□□□□□ -0.82
LIMS4-201ENST00000413601 EREGO14944 169 aa9.95□□□□□ -0.82
LIMS4-201ENST00000413601 SMIM17P0DL12 118 aa9.95□□□□□ -0.82
LIMS4-201ENST00000413601 CEBPGP53567 150 aa9.95□□□□□ -0.82
LIMS4-201ENST00000413601 UBE2D3P61077 147 aa9.95□□□□□ -0.82
LIMS4-201ENST00000413601 UBE2D2P62837 147 aa9.95□□□□□ -0.82
LIMS4-201ENST00000413601 TOR2AQ5JU69 321 aa9.95□□□□□ -0.82
LIMS4-201ENST00000413601 LYZL1Q6UWQ5 148 aa9.95□□□□□ -0.82
LIMS4-201ENST00000413601 NEXN-AS1Q8NBZ9 246 aa9.95□□□□□ -0.82
LIMS4-201ENST00000413601 RNASE7Q9H1E1 156 aaKnown RBP9.95□□□□□ -0.82
LIMS4-201ENST00000413601 DYNC1H1Q14204 4646 aaKnown RBP9.94□□□□□ -0.82
LIMS4-201ENST00000413601 A0A087WTM6 91 aa9.94□□□□□ -0.82
LIMS4-201ENST00000413601 F2Z2F3 143 aa9.94□□□□□ -0.82
LIMS4-201ENST00000413601 FUSP35637 526 aaKnown RBP eCLIP9.94□□□□□ -0.82
LIMS4-201ENST00000413601 CACNG7P62955 275 aa9.94□□□□□ -0.82
LIMS4-201ENST00000413601 OR10G8Q8NGN5 311 aa9.94□□□□□ -0.82
LIMS4-201ENST00000413601 EIF5A2Q9GZV4 153 aaKnown RBP9.94□□□□□ -0.82
LIMS4-201ENST00000413601 DNAH11Q96DT5 4516 aa9.94□□□□□ -0.82
LIMS4-201ENST00000413601 PSCAO43653 123 aa9.93□□□□□ -0.82
LIMS4-201ENST00000413601 DAZ4Q86SG3 579 aaKnown RBP9.93□□□□□ -0.82
LIMS4-201ENST00000413601 RPP21Q9H633 154 aaKnown RBP9.93□□□□□ -0.82
LIMS4-201ENST00000413601 DAZ3Q9NR90 486 aaKnown RBP9.93□□□□□ -0.82
LIMS4-201ENST00000413601 HERC2O95714 4834 aa9.93□□□□□ -0.82
LIMS4-201ENST00000413601 MGPP08493 103 aa9.92□□□□□ -0.82
LIMS4-201ENST00000413601 NTF3P20783 257 aa9.92□□□□□ -0.82
LIMS4-201ENST00000413601 FAM210AQ96ND0 272 aa9.92□□□□□ -0.82
LIMS4-201ENST00000413601 LAGE3Q14657 143 aa9.91□□□□□ -0.82
LIMS4-201ENST00000413601 NIT1Q86X76 327 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms