RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 METRNQ9UJH8 293 aa10.12□□□□□ -0.79
COL6A3-206ENST00000409809 CD24P25063 80 aa10.12□□□□□ -0.79
COL6A3-206ENST00000409809 SPINK13Q1W4C9 94 aa10.12□□□□□ -0.79
COL6A3-206ENST00000409809 FAM19A3Q7Z5A8 133 aa10.12□□□□□ -0.79
COL6A3-206ENST00000409809 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-206ENST00000409809 ADAMTS20P59510 1910 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 LECT2O14960 151 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 TIMM17BO60830 172 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 SPRY4Q9C004 299 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 SPRR3Q9UBC9 169 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 DIRC1Q969H9 104 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 TRAV23DV6A0A075B6W5 121 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 OVOL3O00110 214 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 KAAG1Q9UBP8 84 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 A0A1B0GXF2 115 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 SMIM9A6NGZ8 99 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 MBD3L4A6NDZ8 208 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-206ENST00000409809 MBD3L3A6NE82 208 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-206ENST00000409809 MBD3L5A6NJ08 208 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-206ENST00000409809 RS1O15537 224 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 MBD3L2Q8NHZ7 208 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-206ENST00000409809 IGHV3OR16-10A0A075B7F0 116 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 A0A0U1RQV1 116 aa10.11□□□□□ -0.79
COL6A3-206ENST00000409809 A6NED7 52 aa10.1□□□□□ -0.79
COL6A3-206ENST00000409809 CLPSP04118 112 aa10.1□□□□□ -0.79
COL6A3-206ENST00000409809 USP17L23D6RBM5 183 aa10.1□□□□□ -0.79
COL6A3-206ENST00000409809 ZNF491Q8N8L2 437 aa10.1□□□□□ -0.79
COL6A3-206ENST00000409809 RSPO4Q2I0M5 234 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-206ENST00000409809 FGF23Q9GZV9 251 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-206ENST00000409809 PATE3B3GLJ2 98 aa10.1□□□□□ -0.79
COL6A3-206ENST00000409809 SAA4P35542 130 aa10.1□□□□□ -0.79
COL6A3-206ENST00000409809 TEX22C9J3V5 150 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 TRBV7-3A0A075B6L6 115 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 ANGP03950 147 aaKnown RBP10.09□□□□□ -0.79
COL6A3-206ENST00000409809 C9orf47Q6ZRZ4 202 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 MPLKIPQ8TAP9 179 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 H7C423 109 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 IGHV3-53P01767 116 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 KLHL30-AS1Q8NEE0 82 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 H3BUX3 64 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 NUPR1O60356 82 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 COL4A1P02462 1669 aa10.09□□□□□ -0.79
COL6A3-206ENST00000409809 PRR31Q5SQ13 230 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 PTPRSQ13332 1948 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 K7EQD1 137 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 DEFB130BP0DP73 79 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 DEFB130AP0DP74 79 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 MLST8Q9BVC4 326 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 FAM222AQ5U5X8 452 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 DEFB131AP59861 70 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 ATP6V0E1O15342 81 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 CLEC2BQ92478 149 aa10.08□□□□□ -0.8
COL6A3-206ENST00000409809 C17orf58Q2M2W7 97 aa10.07□□□□□ -0.8
COL6A3-206ENST00000409809 WI2-2373I1.2A0A1W2PRP0 233 aa10.07□□□□□ -0.8
COL6A3-206ENST00000409809 DOPEY1Q5JWR5 2465 aa10.07□□□□□ -0.8
COL6A3-206ENST00000409809 LINC00526Q96FQ7 95 aa10.07□□□□□ -0.8
COL6A3-206ENST00000409809 M0QXV9 152 aa10.07□□□□□ -0.8
COL6A3-206ENST00000409809 C16orf74Q96GX8 76 aa10.07□□□□□ -0.8
COL6A3-206ENST00000409809 CFAP126Q5VTH2 177 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 CPAMD8Q8IZJ3 1885 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 UBE2E2Q96LR5 201 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 COL5A1P20908 1838 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-206ENST00000409809 CCDC168Q8NDH2 2452 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 NDUFA1O15239 70 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 MUC7Q8TAX7 377 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 TRAV12-2A0A075B6T6 113 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 SDIM1Q6ZPB5 146 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 WISP1O95388 367 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 KLK9Q9UKQ9 250 aa10.06□□□□□ -0.8
COL6A3-206ENST00000409809 A0A1W2PRX2 142 aa10.05□□□□□ -0.8
COL6A3-206ENST00000409809 J3QLI3 93 aa10.05□□□□□ -0.8
COL6A3-206ENST00000409809 C19orf71A6NCJ1 209 aa10.05□□□□□ -0.8
COL6A3-206ENST00000409809 PRO0628Q9UI54 55 aa10.05□□□□□ -0.8
COL6A3-206ENST00000409809 XCL1P47992 114 aa10.05□□□□□ -0.8
COL6A3-206ENST00000409809 B3GALT5-AS1P59052 145 aa10.05□□□□□ -0.8
COL6A3-206ENST00000409809 LINC01356Q8N9X3 169 aa10.05□□□□□ -0.8
COL6A3-206ENST00000409809 CLUHP3Q96NS8 147 aa10.05□□□□□ -0.8
COL6A3-206ENST00000409809 IGHV3-30-3P0DP02 117 aa10.04□□□□□ -0.8
COL6A3-206ENST00000409809 FAM167A-AS1Q96KT0 104 aa10.04□□□□□ -0.8
COL6A3-206ENST00000409809 TRBV10-1A0A0K0K1A3 114 aa10.04□□□□□ -0.8
COL6A3-206ENST00000409809 C17orf82Q86X59 251 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-206ENST00000409809 AGPAT4-IT1Q9H0P7 198 aa10.04□□□□□ -0.8
COL6A3-206ENST00000409809 RPL35AP18077 110 aaKnown RBP10.04□□□□□ -0.8
COL6A3-206ENST00000409809 ZNF503Q96F45 646 aa10.04□□□□□ -0.8
COL6A3-206ENST00000409809 PRB3Q04118 309 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-206ENST00000409809 EIF4EBP1Q13541 118 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-206ENST00000409809 MLANAQ16655 118 aa10.03□□□□□ -0.8
COL6A3-206ENST00000409809 Q6JHZ5 121 aa10.03□□□□□ -0.8
COL6A3-206ENST00000409809 IGFL4Q6B9Z1 124 aa10.03□□□□□ -0.8
COL6A3-206ENST00000409809 LINC00173Q6ZV60 143 aa10.03□□□□□ -0.8
COL6A3-206ENST00000409809 COX7BP24311 80 aa10.03□□□□□ -0.8
COL6A3-206ENST00000409809 PMAIP1Q13794 54 aa10.03□□□□□ -0.8
COL6A3-206ENST00000409809 NSUN5P1Q3KNT7 163 aa10.03□□□□□ -0.8
COL6A3-206ENST00000409809 RPL39LQ96EH5 51 aaKnown RBP10.03□□□□□ -0.8
COL6A3-206ENST00000409809 KIR2DL5BQ8NHK3 375 aa10.02□□□□□ -0.8
COL6A3-206ENST00000409809 YPEL4Q96NS1 127 aa10.02□□□□□ -0.81
COL6A3-206ENST00000409809 TRAV7A0A075B6U4 112 aa10.02□□□□□ -0.81
COL6A3-206ENST00000409809 NRACQ8N912 160 aa10.02□□□□□ -0.81
COL6A3-206ENST00000409809 MDS2Q8NDY4 140 aa10.02□□□□□ -0.81
COL6A3-206ENST00000409809 NPBQ8NG41 125 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms