RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ZNF491Q8N8L2 437 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 AJUBAQ96IF1 538 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 JMJD7-PLA2G4BH0Y9G9 81 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 H3BT86 120 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 C20orf197Q8N268 126 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 RPP25LQ8N5L8 163 aaKnown RBP5.68□□□□□ -1.5
SCN9A-202ENST00000409435 C2orf70A6NJV1 201 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 LRRK1Q38SD2 2015 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.68□□□□□ -1.58e-7■■■■■ 49.4
SCN9A-202ENST00000409435 CDSNQ15517 529 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 MRPL35Q9NZE8 188 aaKnown RBP5.68□□□□□ -1.5
SCN9A-202ENST00000409435 DKK2Q9UBU2 259 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 OBSL1O75147 1896 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 C15orf62A8K5M9 175 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 IGKV1-16P04430 117 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 FANCD2OSQ96PS1 177 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 KLK9Q9UKQ9 250 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 TRBV10-2A0A0K0K1G8 114 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 ZNF493Q6ZR52 646 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 ODF3L1Q8IXM7 274 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 PRSS46E5RG02 174 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 SNRNP200O75643 2136 aaKnown RBP5.67□□□□□ -1.5
SCN9A-202ENST00000409435 PMAIP1Q13794 54 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 ODF1Q14990 250 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 RHOHQ15669 191 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 FAM231DQ6ZW35 169 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 C8orf49Q96NF6 230 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 ANGP03950 147 aaKnown RBP5.67□□□□□ -1.5
SCN9A-202ENST00000409435 WDR86Q86TI4 376 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 PMS2P5A8MQ11 134 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 SPRNQ5BIV9 151 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 C5orf24Q7Z6I8 188 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 IGKV1D-13A0A0B4J2D9 117 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 IGKV1-13P0DP09 117 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 GYPEP15421 78 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 Q86TA4 180 aa5.67□□□□□ -1.5
SCN9A-202ENST00000409435 PRRC2AP48634 2157 aaKnown RBP5.66□□□□□ -1.5
SCN9A-202ENST00000409435 IGLV2-18A0A075B6J9 118 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 THAP8Q8NA92 274 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 I3L3M4 83 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 ARMS2P0C7Q2 107 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 C10orf91Q5T1B1 145 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 Q8N7P7 452 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 CLUHP3Q96NS8 147 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 TRBV6-6A0A0A6YYG2 114 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 IGHV3-16A0A0C4DH30 117 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 COL5A1P20908 1838 aaPredicted RBP5.66□□□□□ -1.5
SCN9A-202ENST00000409435 EXOC3-AS1Q8N2X6 119 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 WWC2-AS2Q96NR7 200 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 IGF2RP11717 2491 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 ABCA1O95477 2261 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 SMIM26A0A096LP01 95 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 KRTAP24-1Q3LI83 254 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 NPBQ8NG41 125 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 ESM1Q9NQ30 184 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 TNRC6AQ8NDV7 1962 aaKnown RBP5.66□□□□□ -1.5
SCN9A-202ENST00000409435 ADAMTS20P59510 1910 aa5.66□□□□□ -1.5
SCN9A-202ENST00000409435 IGHV3-30P01768 117 aa5.65□□□□□ -1.5
SCN9A-202ENST00000409435 IGHV3-33P01772 117 aa5.65□□□□□ -1.5
SCN9A-202ENST00000409435 IGHV3-30-3P0DP02 117 aa5.65□□□□□ -1.5
SCN9A-202ENST00000409435 IGHV3-30-5P0DP03 117 aa5.65□□□□□ -1.5
SCN9A-202ENST00000409435 SERTAD4-AS1Q5TG53 156 aa5.65□□□□□ -1.5
SCN9A-202ENST00000409435 TRAV4A0A0B4J268 109 aa5.65□□□□□ -1.5
SCN9A-202ENST00000409435 LINC01548A6NM66 108 aa5.65□□□□□ -1.5
SCN9A-202ENST00000409435 MLST8Q9BVC4 326 aa5.65□□□□□ -1.5
SCN9A-202ENST00000409435 DEFB104AQ8WTQ1 72 aa5.65□□□□□ -1.5
SCN9A-202ENST00000409435 WNK2Q9Y3S1 2297 aa5.65□□□□□ -1.51
SCN9A-202ENST00000409435 IGHV7-81A0A0B4J1V7 117 aa5.65□□□□□ -1.51
SCN9A-202ENST00000409435 DIAPH2-AS1Q14236 149 aa5.65□□□□□ -1.51
SCN9A-202ENST00000409435 LYPD6Q86Y78 171 aa5.65□□□□□ -1.51
SCN9A-202ENST00000409435 LINC00482Q8N8I6 264 aa5.65□□□□□ -1.51
SCN9A-202ENST00000409435 HRCT1Q6UXD1 115 aa5.65□□□□□ -1.51
SCN9A-202ENST00000409435 C7orf33Q8WU49 177 aa5.65□□□□□ -1.51
SCN9A-202ENST00000409435 MT-ATP8P03928 68 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 HIST2H2BDQ6DRA6 164 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 Q8N9W7 124 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 LINC00479Q96M42 142 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 PDE6GP18545 87 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 IL15RAQ13261 267 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 ATP5EP2Q5VTU8 51 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 TMEM14EPQ6UXP3 125 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 ZC2HC1AQ96GY0 325 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 MED12Q93074 2177 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 NXPH4O95158 308 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 IGFL4Q6B9Z1 124 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 C16orf54Q6UWD8 224 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 UPK3BQ9BT76 320 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 DSCAMO60469 2012 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 YLPM1P49750 1951 aaKnown RBP5.64□□□□□ -1.51
SCN9A-202ENST00000409435 TRAV23DV6A0A075B6W5 121 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 PYGO2Q9BRQ0 406 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 HIGD1BQ9P298 99 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 SMIM27A0A1W2PRY6 76 aa5.64□□□□□ -1.51
SCN9A-202ENST00000409435 MRPL51Q4U2R6 128 aaKnown RBP5.64□□□□□ -1.51
SCN9A-202ENST00000409435 LINC00473A8K010 186 aa5.63□□□□□ -1.51
SCN9A-202ENST00000409435 GPHB5Q86YW7 130 aa5.63□□□□□ -1.51
SCN9A-202ENST00000409435 TMEM75Q8N9X5 138 aa5.63□□□□□ -1.51
SCN9A-202ENST00000409435 A0A087WWL8 130 aa5.63□□□□□ -1.51
SCN9A-202ENST00000409435 TMEM213A2RRL7 107 aa5.63□□□□□ -1.51
SCN9A-202ENST00000409435 DYNAPQ8N1N2 210 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms