RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 GAGE1Q13065 139 aa16.1■□□□□ 0.17
SHMT1-204ENST00000395682 GAGE4Q13068 117 aa16.1■□□□□ 0.17
SHMT1-204ENST00000395682 GAGE5Q13069 117 aa16.1■□□□□ 0.17
SHMT1-204ENST00000395682 GAGE13Q4V321 117 aa16.1■□□□□ 0.17
SHMT1-204ENST00000395682 OR10AG1Q8NH19 301 aa16.1■□□□□ 0.17
SHMT1-204ENST00000395682 SMIM12Q96EX1 92 aa16.1■□□□□ 0.17
SHMT1-204ENST00000395682 SSBP4Q9BWG4 385 aaPredicted RBP16.1■□□□□ 0.17
SHMT1-204ENST00000395682 Q9UF83 564 aa16.1■□□□□ 0.17
SHMT1-204ENST00000395682 TRBV20OR9-2A0A075B6H5 130 aa16.09■□□□□ 0.17
SHMT1-204ENST00000395682 MUC21A0A0G2JKD1 596 aa16.09■□□□□ 0.17
SHMT1-204ENST00000395682 MUC21A0A140T8X8 626 aa16.09■□□□□ 0.17
SHMT1-204ENST00000395682 SNAI2O43623 268 aa16.09■□□□□ 0.17
SHMT1-204ENST00000395682 OR5AL1P0C617 328 aa16.09■□□□□ 0.17
SHMT1-204ENST00000395682 DNAH10OSP0CZ25 163 aa16.09■□□□□ 0.17
SHMT1-204ENST00000395682 EVI2AP22794 236 aa16.09■□□□□ 0.17
SHMT1-204ENST00000395682 GTSF1LQ9H1H1 148 aa16.09■□□□□ 0.17
SHMT1-204ENST00000395682 TRAV8-6A0A0B4J262 113 aa16.08■□□□□ 0.16
SHMT1-204ENST00000395682 RBFOX3A6NFN3 312 aa16.08■□□□□ 0.16
SHMT1-204ENST00000395682 OR10J3Q5JRS4 329 aa16.08■□□□□ 0.16
SHMT1-204ENST00000395682 LYPD6BQ8NI32 183 aa16.08■□□□□ 0.16
SHMT1-204ENST00000395682 C19orf71A6NCJ1 209 aa16.07■□□□□ 0.16
SHMT1-204ENST00000395682 K7EP13 123 aa16.07■□□□□ 0.16
SHMT1-204ENST00000395682 SSTP61278 116 aa16.07■□□□□ 0.16
SHMT1-204ENST00000395682 OR2D3Q8NGH3 330 aa16.07■□□□□ 0.16
SHMT1-204ENST00000395682 TNFRSF18Q9Y5U5 241 aa16.07■□□□□ 0.16
SHMT1-204ENST00000395682 PKHD1P08F94 4074 aa16.06■□□□□ 0.16
SHMT1-204ENST00000395682 IGHV3-38A0A0C4DH36 116 aa16.06■□□□□ 0.16
SHMT1-204ENST00000395682 LINC00694P0DN24 101 aa16.06■□□□□ 0.16
SHMT1-204ENST00000395682 GZMBP10144 247 aa16.06■□□□□ 0.16
SHMT1-204ENST00000395682 LELP1Q5T871 98 aa16.06■□□□□ 0.16
SHMT1-204ENST00000395682 SPANXN1Q5VSR9 72 aa16.06■□□□□ 0.16
SHMT1-204ENST00000395682 BIN3Q9NQY0 253 aa16.06■□□□□ 0.16
SHMT1-204ENST00000395682 RPS20P60866 119 aaKnown RBP16.05■□□□□ 0.16
SHMT1-204ENST00000395682 P01737 135 aa16.04■□□□□ 0.16
SHMT1-204ENST00000395682 Q6ZRN7 208 aaPredicted RBP16.03■□□□□ 0.16
SHMT1-204ENST00000395682 NFE4Q86UQ8 179 aa16.03■□□□□ 0.16
SHMT1-204ENST00000395682 TPPP3Q9BW30 176 aa16.03■□□□□ 0.16
SHMT1-204ENST00000395682 MSRB1Q9NZV6 116 aa16.03■□□□□ 0.16
SHMT1-204ENST00000395682 RAB4BP61018 213 aa16.02■□□□□ 0.16
SHMT1-204ENST00000395682 LINC01556Q5JQF7 62 aa16.02■□□□□ 0.16
SHMT1-204ENST00000395682 C10orf126Q8N4M7 172 aa16.02■□□□□ 0.16
SHMT1-204ENST00000395682 FER1L6-AS1Q8NA97 138 aa16.02■□□□□ 0.16
SHMT1-204ENST00000395682 OCC1Q8TAD7 63 aa16.02■□□□□ 0.16
SHMT1-204ENST00000395682 XKRY2A2RUG3 117 aa16.01■□□□□ 0.15
SHMT1-204ENST00000395682 TMEM250H0YL14 139 aa16.01■□□□□ 0.15
SHMT1-204ENST00000395682 IGLC6P0CF74 106 aa16.01■□□□□ 0.15
SHMT1-204ENST00000395682 NUDT10Q8NFP7 164 aa16.01■□□□□ 0.15
SHMT1-204ENST00000395682 NUDT11Q96G61 164 aa16.01■□□□□ 0.15
SHMT1-204ENST00000395682 DNAH11Q96DT5 4516 aa16■□□□□ 0.15
SHMT1-204ENST00000395682 TRBV10-1A0A0K0K1A3 114 aa16■□□□□ 0.15
SHMT1-204ENST00000395682 ZNF56Q15929 161 aa16■□□□□ 0.15
SHMT1-204ENST00000395682 F5H697 171 aa15.99■□□□□ 0.15
SHMT1-204ENST00000395682 TOR2AQ5JU69 321 aa15.99■□□□□ 0.15
SHMT1-204ENST00000395682 EIF5A2Q9GZV4 153 aaKnown RBP15.99■□□□□ 0.15
SHMT1-204ENST00000395682 A0A087WWC5 75 aa15.98■□□□□ 0.15
SHMT1-204ENST00000395682 K7EN84 100 aa15.98■□□□□ 0.15
SHMT1-204ENST00000395682 IGHV3-30P01768 117 aa15.98■□□□□ 0.15
SHMT1-204ENST00000395682 IGHV3-33P01772 117 aa15.98■□□□□ 0.15
SHMT1-204ENST00000395682 SMIM17P0DL12 118 aa15.98■□□□□ 0.15
SHMT1-204ENST00000395682 IGHV3-30-3P0DP02 117 aa15.98■□□□□ 0.15
SHMT1-204ENST00000395682 IGHV3-30-5P0DP03 117 aa15.98■□□□□ 0.15
SHMT1-204ENST00000395682 CEBPGP53567 150 aa15.98■□□□□ 0.15
SHMT1-204ENST00000395682 RPL36AP83881 106 aaKnown RBP15.98■□□□□ 0.15
SHMT1-204ENST00000395682 RPL36ALQ969Q0 106 aaKnown RBP15.98■□□□□ 0.15
SHMT1-204ENST00000395682 DYNC1H1Q14204 4646 aaKnown RBP15.98■□□□□ 0.15
SHMT1-204ENST00000395682 TRBV7-3A0A075B6L6 115 aa15.97■□□□□ 0.15
SHMT1-204ENST00000395682 F2Z2F3 143 aa15.97■□□□□ 0.15
SHMT1-204ENST00000395682 CACNG7P62955 275 aa15.97■□□□□ 0.15
SHMT1-204ENST00000395682 SPATA12Q7Z6I5 190 aa15.97■□□□□ 0.15
SHMT1-204ENST00000395682 AP1S3Q96PC3 154 aa15.97■□□□□ 0.15
SHMT1-204ENST00000395682 RNASE7Q9H1E1 156 aaKnown RBP15.97■□□□□ 0.15
SHMT1-204ENST00000395682 KIF25-AS1Q9Y6Z4 181 aa15.97■□□□□ 0.15
SHMT1-204ENST00000395682 C16orf90A8MZG2 172 aa15.96■□□□□ 0.15
SHMT1-204ENST00000395682 FAM210AQ96ND0 272 aa15.96■□□□□ 0.15
SHMT1-204ENST00000395682 IBA57-AS1B1ANH7 110 aa15.95■□□□□ 0.14
SHMT1-204ENST00000395682 UBE2D3P61077 147 aa15.95■□□□□ 0.14
SHMT1-204ENST00000395682 UBE2D2P62837 147 aa15.95■□□□□ 0.14
SHMT1-204ENST00000395682 LYZL1Q6UWQ5 148 aa15.95■□□□□ 0.14
SHMT1-204ENST00000395682 OR10G8Q8NGN5 311 aa15.95■□□□□ 0.14
SHMT1-204ENST00000395682 RPP21Q9H633 154 aaKnown RBP15.95■□□□□ 0.14
SHMT1-204ENST00000395682 Q8N3U1 123 aa15.93■□□□□ 0.14
SHMT1-204ENST00000395682 NEXN-AS1Q8NBZ9 246 aa15.93■□□□□ 0.14
SHMT1-204ENST00000395682 KRTAP10-2P60368 255 aa15.92■□□□□ 0.14
SHMT1-204ENST00000395682 ERVFC1-1P60608 527 aa15.92■□□□□ 0.14
SHMT1-204ENST00000395682 KIAA1109Q2LD37 5005 aa15.92■□□□□ 0.14
SHMT1-204ENST00000395682 EREGO14944 169 aa15.91■□□□□ 0.14
SHMT1-204ENST00000395682 NDUFS6O75380 124 aaKnown RBP15.91■□□□□ 0.14
SHMT1-204ENST00000395682 NTF3P20783 257 aa15.91■□□□□ 0.14
SHMT1-204ENST00000395682 WDR73Q6P4I2 378 aa15.91■□□□□ 0.14
SHMT1-204ENST00000395682 TEX261Q6UWH6 196 aa15.91■□□□□ 0.14
SHMT1-204ENST00000395682 Q9HAA7 133 aa15.91■□□□□ 0.14
SHMT1-204ENST00000395682 MGPP08493 103 aa15.9■□□□□ 0.14
SHMT1-204ENST00000395682 SRP19P09132 144 aaKnown RBP15.9■□□□□ 0.14
SHMT1-204ENST00000395682 SMIM7Q9BQ49 75 aa15.9■□□□□ 0.14
SHMT1-204ENST00000395682 GATCO43716 136 aaKnown RBP15.89■□□□□ 0.13
SHMT1-204ENST00000395682 CTRLP40313 264 aa15.89■□□□□ 0.13
SHMT1-204ENST00000395682 A0A087WTM6 91 aa15.88■□□□□ 0.13
SHMT1-204ENST00000395682 TRGC1P0CF51 173 aa15.88■□□□□ 0.13
SHMT1-204ENST00000395682 FAM231DQ6ZW35 169 aa15.88■□□□□ 0.13
SHMT1-204ENST00000395682 DAZ4Q86SG3 579 aaKnown RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms