RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CREBBPQ92793 2442 aa9.2□□□□□ -0.94
SYNPO-202ENST00000394243 CLUHP3Q96NS8 147 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 ZSWIM8A7E2V4 1837 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 ZNF503Q96F45 646 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 MALRD1Q5VYJ5 2156 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 TNCP24821 2201 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 RNF114Q9Y508 228 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 ACACAQ13085 2346 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 C16orf54Q6UWD8 224 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 TIMM17AQ99595 171 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 I3L2K1 104 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 PLXNB1O43157 2135 aa9.19□□□□□ -0.94
SYNPO-202ENST00000394243 CGB7P0DN87 165 aa9.18□□□□□ -0.94
SYNPO-202ENST00000394243 CTRLP40313 264 aa9.18□□□□□ -0.94
SYNPO-202ENST00000394243 FAM110AQ9BQ89 295 aa9.18□□□□□ -0.94
SYNPO-202ENST00000394243 NLRC5Q86WI3 1866 aa9.18□□□□□ -0.94
SYNPO-202ENST00000394243 COX7A2LO14548 114 aa9.18□□□□□ -0.94
SYNPO-202ENST00000394243 MIR7-3HGQ8N6C7 128 aa9.18□□□□□ -0.94
SYNPO-202ENST00000394243 IGHV1-58A0A0C4DH39 117 aa9.18□□□□□ -0.94
SYNPO-202ENST00000394243 NFE4Q86UQ8 179 aa9.18□□□□□ -0.94
SYNPO-202ENST00000394243 MAPK1IP1LQ8NDC0 245 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 C10orf105Q8TEF2 133 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 RITA1Q96K30 269 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 MGAMO43451 1857 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 PRAC2D3DTV9 90 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 IGKV1-17P01599 117 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 WFDC11Q8NEX6 87 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 RMI2Q96E14 147 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 CAMK2N2Q96S95 79 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 K7EIM0 57 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 DAZ2Q13117 558 aaKnown RBP9.17□□□□□ -0.94
SYNPO-202ENST00000394243 DAZ4Q86SG3 579 aaKnown RBP9.17□□□□□ -0.94
SYNPO-202ENST00000394243 DAZ3Q9NR90 486 aaKnown RBP9.17□□□□□ -0.94
SYNPO-202ENST00000394243 K7EQD1 137 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 MED13LQ71F56 2210 aa9.17□□□□□ -0.94
SYNPO-202ENST00000394243 IGHV3-30-3P0DP02 117 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 APOC4P55056 127 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 MLST8Q9BVC4 326 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 TEX22C9J3V5 150 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 CCDC179H3BU77 68 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 MIAQ16674 131 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 C11orf53Q8IXP5 236 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 FGF23Q9GZV9 251 aaPredicted RBP9.16□□□□□ -0.94
SYNPO-202ENST00000394243 IGLV1-44P01699 117 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 GNLYP22749 145 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 Q6ZS92 163 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 NDUFA7O95182 113 aa9.16□□□□□ -0.94
SYNPO-202ENST00000394243 GDF5OSQ5U4N7 250 aa9.15□□□□□ -0.94
SYNPO-202ENST00000394243 APRG1Q8IVJ8 170 aa9.15□□□□□ -0.94
SYNPO-202ENST00000394243 C19orf71A6NCJ1 209 aa9.15□□□□□ -0.94
SYNPO-202ENST00000394243 RNF223E7ERA6 249 aa9.15□□□□□ -0.94
SYNPO-202ENST00000394243 PLXNA2O75051 1894 aa9.15□□□□□ -0.94
SYNPO-202ENST00000394243 GATA3P23771 443 aa9.15□□□□□ -0.95
SYNPO-202ENST00000394243 NPBQ8NG41 125 aa9.15□□□□□ -0.95
SYNPO-202ENST00000394243 TM2D2Q9BX73 214 aa9.15□□□□□ -0.95
SYNPO-202ENST00000394243 THSD7AQ9UPZ6 1657 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 A0A1B0GXF2 115 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 GYPEP15421 78 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 ENHOQ6UWT2 76 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 IGLV2-23P01705 113 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 PLA2G5P39877 138 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 C9orf47Q6ZRZ4 202 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 SEM1Q6ZVN7 128 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 FRMPD3Q5JV73 1810 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 DIRC1Q969H9 104 aa9.14□□□□□ -0.95
SYNPO-202ENST00000394243 TANC2Q9HCD6 1990 aa9.13□□□□□ -0.95
SYNPO-202ENST00000394243 KIAA1549Q9HCM3 1950 aa9.13□□□□□ -0.95
SYNPO-202ENST00000394243 WDR90Q96KV7 1748 aa9.13□□□□□ -0.95
SYNPO-202ENST00000394243 A0A0J9YXY3 114 aa9.13□□□□□ -0.95
SYNPO-202ENST00000394243 CTSGP08311 255 aa9.13□□□□□ -0.95
SYNPO-202ENST00000394243 PRR30Q53SZ7 412 aaPredicted RBP9.13□□□□□ -0.95
SYNPO-202ENST00000394243 TRBV7-3A0A075B6L6 115 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 H3BUA1 57 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 HOXB4P17483 251 aaPredicted RBP9.12□□□□□ -0.95
SYNPO-202ENST00000394243 KAAG1Q9UBP8 84 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 IGLV11-55A0A075B6I3 123 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 BPY2O14599 106 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 PDE6GP18545 87 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 SPRNQ5BIV9 151 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 PRSS33Q8NF86 280 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 NBASA2RRP1 2371 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 FNDC1Q4ZHG4 1894 aaPredicted RBP9.12□□□□□ -0.95
SYNPO-202ENST00000394243 IGHV4OR15-8A0A075B7B6 117 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 A0A087WW49 117 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 CXCL5P42830 114 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 CTSZQ9UBR2 303 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 SEC61GP60059 68 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 C1orf195Q5TG92 126 aa9.12□□□□□ -0.95
SYNPO-202ENST00000394243 HIST2H2BDQ6DRA6 164 aa9.11□□□□□ -0.95
SYNPO-202ENST00000394243 SCXQ7RTU7 201 aa9.11□□□□□ -0.95
SYNPO-202ENST00000394243 C11orf1Q9H5F2 150 aa9.11□□□□□ -0.95
SYNPO-202ENST00000394243 PCDH15Q96QU1 1955 aa9.11□□□□□ -0.95
SYNPO-202ENST00000394243 M0QXV9 152 aa9.11□□□□□ -0.95
SYNPO-202ENST00000394243 IGLV2-14P01704 120 aa9.11□□□□□ -0.95
SYNPO-202ENST00000394243 DEFB136Q30KP8 78 aa9.11□□□□□ -0.95
SYNPO-202ENST00000394243 CEMP1Q6PRD7 247 aaPredicted RBP9.11□□□□□ -0.95
SYNPO-202ENST00000394243 LINC00322Q6ZN03 302 aaPredicted RBP9.11□□□□□ -0.95
SYNPO-202ENST00000394243 MRPL36Q9P0J6 103 aaKnown RBP9.11□□□□□ -0.95
SYNPO-202ENST00000394243 ELANEP08246 267 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 MAPKAPK5-AS1Q8N8E1 139 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms