RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 KIR2DL4Q99706 377 aa14.04□□□□□ -0.16
CBX1-202ENST00000393408 F5H697 171 aa14.04□□□□□ -0.16
CBX1-202ENST00000393408 LGALS9O00182 355 aa14.04□□□□□ -0.16
CBX1-202ENST00000393408 C9orf85Q96MD7 179 aa14.04□□□□□ -0.16
CBX1-202ENST00000393408 TIMM17AQ99595 171 aa14.04□□□□□ -0.16
CBX1-202ENST00000393408 PRO0461Q9UI25 63 aa14.04□□□□□ -0.16
CBX1-202ENST00000393408 SDHAF1A6NFY7 115 aa14.03□□□□□ -0.16
CBX1-202ENST00000393408 PSMB8P28062 276 aa14.03□□□□□ -0.16
CBX1-202ENST00000393408 EMP1P54849 157 aa14.03□□□□□ -0.16
CBX1-202ENST00000393408 ODF3Q96PU9 254 aa14.03□□□□□ -0.16
CBX1-202ENST00000393408 IGHV3-16A0A0C4DH30 117 aa14.03□□□□□ -0.16
CBX1-202ENST00000393408 TRBV6-5A0A0K0K1A5 114 aa14.03□□□□□ -0.16
CBX1-202ENST00000393408 TRBV27A0A0K0K1C4 114 aa14.03□□□□□ -0.16
CBX1-202ENST00000393408 GAGE13Q4V321 117 aa14.03□□□□□ -0.16
CBX1-202ENST00000393408 UBE2D1P51668 147 aa14.02□□□□□ -0.16
CBX1-202ENST00000393408 HERVK_113P61574 105 aa14.02□□□□□ -0.16
CBX1-202ENST00000393408 PGPEP1Q9NXJ5 209 aa14.02□□□□□ -0.16
CBX1-202ENST00000393408 TMEM238LA0A1B0GVL6 79 aa14.02□□□□□ -0.17
CBX1-202ENST00000393408 A6NJY4 79 aa14.02□□□□□ -0.17
CBX1-202ENST00000393408 ZNF688P0C7X2 276 aa14.02□□□□□ -0.17
CBX1-202ENST00000393408 SRSF9Q13242 221 aaKnown RBP eCLIP14.01□□□□□ -0.17
CBX1-202ENST00000393408 A0A0J9YX75 114 aa14.01□□□□□ -0.17
CBX1-202ENST00000393408 MDFICQ9P1T7 246 aa14.01□□□□□ -0.17
CBX1-202ENST00000393408 ETDBQ3ZM63 59 aa14□□□□□ -0.17
CBX1-202ENST00000393408 FAM74A4Q5TZK3 123 aa14□□□□□ -0.17
CBX1-202ENST00000393408 SH2D6Q7Z4S9 175 aa14□□□□□ -0.17
CBX1-202ENST00000393408 A0A0J9YY99 117 aa14□□□□□ -0.17
CBX1-202ENST00000393408 MRPL16Q9NX20 251 aaKnown RBP14□□□□□ -0.17
CBX1-202ENST00000393408 TRAV12-2A0A075B6T6 113 aa13.99□□□□□ -0.17
CBX1-202ENST00000393408 TMEM238C9JI98 176 aa13.99□□□□□ -0.17
CBX1-202ENST00000393408 ZNF876PQ49A33 203 aa13.99□□□□□ -0.17
CBX1-202ENST00000393408 C10orf99Q6UWK7 81 aa13.99□□□□□ -0.17
CBX1-202ENST00000393408 MTURNQ8N3F0 131 aa13.99□□□□□ -0.17
CBX1-202ENST00000393408 B4DSR2 109 aa13.99□□□□□ -0.17
CBX1-202ENST00000393408 TSPEAR-AS2P59090 65 aa13.99□□□□□ -0.17
CBX1-202ENST00000393408 ZNRF2Q8NHG8 242 aa13.99□□□□□ -0.17
CBX1-202ENST00000393408 M0QY20 66 aa13.98□□□□□ -0.17
CBX1-202ENST00000393408 IGKV3-20P01619 116 aa13.98□□□□□ -0.17
CBX1-202ENST00000393408 Q8N1Y9 231 aa13.98□□□□□ -0.17
CBX1-202ENST00000393408 SYT8Q8NBV8 401 aa13.98□□□□□ -0.17
CBX1-202ENST00000393408 J3QR89 54 aa13.98□□□□□ -0.17
CBX1-202ENST00000393408 K7EQG2 157 aa13.98□□□□□ -0.17
CBX1-202ENST00000393408 IGHV4-59P01825 116 aa13.98□□□□□ -0.17
CBX1-202ENST00000393408 ZNF256Q9Y2P7 627 aaPredicted RBP13.98□□□□□ -0.17
CBX1-202ENST00000393408 SNRPD3P62318 126 aaKnown RBP13.97□□□□□ -0.17
CBX1-202ENST00000393408 ZNF56Q15929 161 aa13.97□□□□□ -0.17
CBX1-202ENST00000393408 SPAG8Q99932 426 aaPredicted RBP13.97□□□□□ -0.17
CBX1-202ENST00000393408 TSPAN13O95857 204 aa13.96□□□□□ -0.17
CBX1-202ENST00000393408 TMEM170BQ5T4T1 132 aa13.96□□□□□ -0.17
CBX1-202ENST00000393408 NSUN5P1Q3KNT7 163 aa13.96□□□□□ -0.17
CBX1-202ENST00000393408 TSSC4Q9Y5U2 329 aaPredicted RBP13.96□□□□□ -0.17
CBX1-202ENST00000393408 COL12A1Q99715 3063 aa13.95□□□□□ -0.18
CBX1-202ENST00000393408 IGHV1OR15-1A0A075B7D0 117 aa13.95□□□□□ -0.18
CBX1-202ENST00000393408 TMEM89A2RUT3 159 aa13.95□□□□□ -0.18
CBX1-202ENST00000393408 DEFB112Q30KQ8 113 aa13.95□□□□□ -0.18
CBX1-202ENST00000393408 RHOHQ15669 191 aa13.95□□□□□ -0.18
CBX1-202ENST00000393408 AMELXQ99217 191 aa13.95□□□□□ -0.18
CBX1-202ENST00000393408 SPINK13Q1W4C9 94 aa13.94□□□□□ -0.18
CBX1-202ENST00000393408 DLX4Q92988 240 aaPredicted RBP13.94□□□□□ -0.18
CBX1-202ENST00000393408 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.94□□□□□ -0.184e-8■■■■□ 23.2
CBX1-202ENST00000393408 GAGE12HA6NDE8 117 aa13.94□□□□□ -0.18
CBX1-202ENST00000393408 GATA3P23771 443 aa13.94□□□□□ -0.18
CBX1-202ENST00000393408 TRPT1Q86TN4 253 aaKnown RBP13.94□□□□□ -0.18
CBX1-202ENST00000393408 NFE4Q86UQ8 179 aa13.94□□□□□ -0.18
CBX1-202ENST00000393408 SLC25A29Q8N8R3 303 aa13.94□□□□□ -0.18
CBX1-202ENST00000393408 APOMO95445 188 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 IGHV3-30P01768 117 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 IGHV3-30-5P0DP03 117 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 UBE2D3P61077 147 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 UBE2D2P62837 147 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 NDUFA11Q86Y39 141 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 PIEZO1Q92508 2521 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 P0DMU3 169 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 FAM231AP0DMU4 169 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 FAM231CP0DMU5 169 aa13.93□□□□□ -0.18
CBX1-202ENST00000393408 OPRPNQ99935 248 aaPredicted RBP13.93□□□□□ -0.18
CBX1-202ENST00000393408 CELSR2Q9HCU4 2923 aa13.92□□□□□ -0.18
CBX1-202ENST00000393408 J3QQQ9 107 aa13.92□□□□□ -0.18
CBX1-202ENST00000393408 CFAP126Q5VTH2 177 aa13.92□□□□□ -0.18
CBX1-202ENST00000393408 SIGMAR1Q99720 223 aa13.92□□□□□ -0.18
CBX1-202ENST00000393408 AZU1P20160 251 aa13.92□□□□□ -0.18
CBX1-202ENST00000393408 SMCPP49901 116 aaPredicted RBP13.92□□□□□ -0.18
CBX1-202ENST00000393408 SYNJ2BPP57105 145 aa13.92□□□□□ -0.18
CBX1-202ENST00000393408 SPATA25Q9BR10 227 aa13.92□□□□□ -0.18
CBX1-202ENST00000393408 GTSF1LQ9H1H1 148 aa13.92□□□□□ -0.18
CBX1-202ENST00000393408 INSL3P51460 131 aa13.91□□□□□ -0.18
CBX1-202ENST00000393408 SPG11Q96JI7 2443 aa13.91□□□□□ -0.18
CBX1-202ENST00000393408 MAP1AP78559 2803 aaPredicted RBP13.91□□□□□ -0.18
CBX1-202ENST00000393408 LOC107984156A0A0G2JMH3 177 aa13.91□□□□□ -0.18
CBX1-202ENST00000393408 ARL17AQ8IVW1 177 aa13.91□□□□□ -0.18
CBX1-202ENST00000393408 CSPG4Q6UVK1 2322 aa13.91□□□□□ -0.18
CBX1-202ENST00000393408 SFTA2Q6UW10 78 aa13.9□□□□□ -0.18
CBX1-202ENST00000393408 RNF152Q8N8N0 203 aa13.9□□□□□ -0.18
CBX1-202ENST00000393408 C20orf203Q8NBC4 194 aa13.9□□□□□ -0.18
CBX1-202ENST00000393408 CFC1BP0CG36 223 aa13.9□□□□□ -0.18
CBX1-202ENST00000393408 CFC1P0CG37 223 aa13.9□□□□□ -0.18
CBX1-202ENST00000393408 LGALS3P17931 250 aaKnown RBP13.9□□□□□ -0.18
CBX1-202ENST00000393408 PSMB2P49721 201 aa13.9□□□□□ -0.18
CBX1-202ENST00000393408 TMEM223A0PJW6 202 aa13.89□□□□□ -0.19
CBX1-202ENST00000393408 I3L3M4 83 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms