RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 PATE2Q6UY27 113 aa7.45□□□□□ -1.22
SNX1-202ENST00000380285 RPL39LQ96EH5 51 aaKnown RBP7.45□□□□□ -1.22
SNX1-202ENST00000380285 NBASA2RRP1 2371 aa7.45□□□□□ -1.22
SNX1-202ENST00000380285 VPREB3Q9UKI3 123 aa7.45□□□□□ -1.22
SNX1-202ENST00000380285 DIAPH2-AS1Q14236 149 aa7.45□□□□□ -1.22
SNX1-202ENST00000380285 Q8N1Y9 231 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 CENPVL3A0A0U1RRI6 287 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 CHKB-CPT1BH3BT56 60 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 CFHR3Q02985 330 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 LINC00173Q6ZV60 143 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 FAM215AQ9Y5M1 114 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 C2orf70A6NJV1 201 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 CTSGP08311 255 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 ATP5EP2Q5VTU8 51 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 MED13LQ71F56 2210 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.44□□□□□ -1.22
SNX1-202ENST00000380285 IGKV2-29A2NJV5 120 aaPredicted RBP7.44□□□□□ -1.22
SNX1-202ENST00000380285 IGHV1-58A0A0C4DH39 117 aa7.44□□□□□ -1.22
SNX1-202ENST00000380285 TRBV7-3A0A075B6L6 115 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 TRAV4A0A0B4J268 109 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 COX7A2LO14548 114 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 NDUFA11Q86Y39 141 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 VSIG2Q96IQ7 327 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 IGHV7-81A0A0B4J1V7 117 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 XCL1P47992 114 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 MDFICQ9P1T7 246 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 IGFL2Q6UWQ7 119 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 WNK1Q9H4A3 2382 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 NUP210LQ5VU65 1888 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 GATA1P15976 413 aaPredicted RBP7.43□□□□□ -1.22
SNX1-202ENST00000380285 IGF2-ASQ6U949 168 aa7.43□□□□□ -1.22
SNX1-202ENST00000380285 TM2D2Q9BX73 214 aa7.42□□□□□ -1.22
SNX1-202ENST00000380285 FGF23Q9GZV9 251 aaPredicted RBP7.42□□□□□ -1.22
SNX1-202ENST00000380285 CTSZQ9UBR2 303 aa7.42□□□□□ -1.22
SNX1-202ENST00000380285 IGLV2-14P01704 120 aa7.42□□□□□ -1.22
SNX1-202ENST00000380285 P0C879 139 aa7.42□□□□□ -1.22
SNX1-202ENST00000380285 NREPQ16612 68 aa7.42□□□□□ -1.22
SNX1-202ENST00000380285 NOP10Q9NPE3 64 aaKnown RBP7.42□□□□□ -1.22
SNX1-202ENST00000380285 MRPL36Q9P0J6 103 aaKnown RBP7.42□□□□□ -1.22
SNX1-202ENST00000380285 UQCRQO14949 82 aa7.42□□□□□ -1.22
SNX1-202ENST00000380285 ZNF503Q96F45 646 aa7.42□□□□□ -1.22
SNX1-202ENST00000380285 A0A0J9YXV3 536 aa7.42□□□□□ -1.22
SNX1-202ENST00000380285 CGB3P0DN86 165 aa7.42□□□□□ -1.22
SNX1-202ENST00000380285 NDUFB1O75438 58 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 RNASE13Q5GAN3 156 aaKnown RBP7.41□□□□□ -1.22
SNX1-202ENST00000380285 PLA2G2CQ5R387 149 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 Q6ZUT4 128 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 COL4A6Q14031 1691 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 ATRXP46100 2492 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 MIAQ16674 131 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 ODF3Q96PU9 254 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 SPANXB1Q9NS25 103 aaPredicted RBP7.41□□□□□ -1.22
SNX1-202ENST00000380285 ETDCA0A1B0GVM5 59 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 RNF223E7ERA6 249 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 IGLV2-23P01705 113 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 NDUFV3P56181 108 aaKnown RBP7.41□□□□□ -1.22
SNX1-202ENST00000380285 ASPHD1Q5U4P2 390 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 HIST2H2BCQ6DN03 193 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 GPHB5Q86YW7 130 aa7.41□□□□□ -1.22
SNX1-202ENST00000380285 TRBV10-1A0A0K0K1A3 114 aa7.4□□□□□ -1.22
SNX1-202ENST00000380285 TMEM61Q8N0U2 210 aa7.4□□□□□ -1.22
SNX1-202ENST00000380285 PCNX3Q9H6A9 2034 aa7.4□□□□□ -1.22
SNX1-202ENST00000380285 TEX22C9J3V5 150 aa7.4□□□□□ -1.22
SNX1-202ENST00000380285 CGB7P0DN87 165 aa7.4□□□□□ -1.22
SNX1-202ENST00000380285 ATG2AQ2TAZ0 1938 aa7.4□□□□□ -1.22
SNX1-202ENST00000380285 MUC4Q99102 2169 aa7.4□□□□□ -1.22
SNX1-202ENST00000380285 LINC00574Q9H8X3 128 aa7.4□□□□□ -1.23
SNX1-202ENST00000380285 CRYGBP07316 175 aa7.4□□□□□ -1.23
SNX1-202ENST00000380285 ATP5EP56381 51 aaPredicted RBP7.39□□□□□ -1.23
SNX1-202ENST00000380285 HIGD2BQ4VC39 106 aa7.39□□□□□ -1.23
SNX1-202ENST00000380285 IMUPQ9GZP8 106 aa7.39□□□□□ -1.23
SNX1-202ENST00000380285 TRAV26-1A0A087WT03 109 aa7.39□□□□□ -1.23
SNX1-202ENST00000380285 A0A0J9YXY3 114 aa7.39□□□□□ -1.23
SNX1-202ENST00000380285 MSRB1Q9NZV6 116 aa7.39□□□□□ -1.23
SNX1-202ENST00000380285 C5orf56Q8N8D9 126 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 CEP192Q8TEP8 1941 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 CCL24O00175 119 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 C20orf203Q8NBC4 194 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 IGKV1OR2-108A0A075B7D4 117 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 IGKV3D-7A0A0C4DH55 119 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 P0DMU3 169 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 FAM231AP0DMU4 169 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 FAM231CP0DMU5 169 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 ODF3L1Q8IXM7 274 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 AGRNO00468 2067 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 H7C423 109 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 NDUFA1O15239 70 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 C3orf56Q8N813 242 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 PRSS33Q8NF86 280 aa7.38□□□□□ -1.23
SNX1-202ENST00000380285 IGLV1-47P01700 117 aa7.37□□□□□ -1.23
SNX1-202ENST00000380285 Q8N9W7 124 aa7.37□□□□□ -1.23
SNX1-202ENST00000380285 YPEL4Q96NS1 127 aa7.37□□□□□ -1.23
SNX1-202ENST00000380285 TCL1BO95988 128 aa7.37□□□□□ -1.23
SNX1-202ENST00000380285 CAMK2N2Q96S95 79 aa7.37□□□□□ -1.23
SNX1-202ENST00000380285 HIST2H2BDQ6DRA6 164 aa7.37□□□□□ -1.23
SNX1-202ENST00000380285 C5orf38Q86SI9 138 aa7.37□□□□□ -1.23
SNX1-202ENST00000380285 DIRC1Q969H9 104 aa7.37□□□□□ -1.23
SNX1-202ENST00000380285 SP5Q6BEB4 398 aaPredicted RBP7.37□□□□□ -1.23
SNX1-202ENST00000380285 WFDC9Q8NEX5 89 aa7.37□□□□□ -1.23
SNX1-202ENST00000380285 BRK1Q8WUW1 75 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms