RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 CNFNQ9BYD5 112 aa13.02□□□□□ -0.33
SSU72-203ENST00000378725 RNF212Q495C1 297 aa13.01□□□□□ -0.33
SSU72-203ENST00000378725 SLC25A29Q8N8R3 303 aa13.01□□□□□ -0.33
SSU72-203ENST00000378725 V9GYV3 84 aa13.01□□□□□ -0.33
SSU72-203ENST00000378725 KMT2CQ8NEZ4 4911 aaKnown RBP13.01□□□□□ -0.33
SSU72-203ENST00000378725 A0A087WWL8 130 aa13□□□□□ -0.33
SSU72-203ENST00000378725 MRPL23Q16540 153 aaKnown RBP13□□□□□ -0.33
SSU72-203ENST00000378725 TSKUQ8WUA8 353 aa13□□□□□ -0.33
SSU72-203ENST00000378725 GFRA4Q9GZZ7 299 aa13□□□□□ -0.33
SSU72-203ENST00000378725 ICOSQ9Y6W8 199 aa13□□□□□ -0.33
SSU72-203ENST00000378725 LYSTQ99698 3801 aa13□□□□□ -0.33
SSU72-203ENST00000378725 FAM231BA6NCW3 169 aa12.99□□□□□ -0.33
SSU72-203ENST00000378725 K7EQD1 137 aa12.99□□□□□ -0.33
SSU72-203ENST00000378725 GYPEP15421 78 aa12.99□□□□□ -0.33
SSU72-203ENST00000378725 SSTP61278 116 aa12.99□□□□□ -0.33
SSU72-203ENST00000378725 COMMD7Q86VX2 200 aa12.99□□□□□ -0.33
SSU72-203ENST00000378725 OR10G8Q8NGN5 311 aa12.99□□□□□ -0.33
SSU72-203ENST00000378725 PRADC1Q9BSG0 188 aa12.99□□□□□ -0.33
SSU72-203ENST00000378725 MSRB1Q9NZV6 116 aa12.99□□□□□ -0.33
SSU72-203ENST00000378725 KIF25-AS1Q9Y6Z4 181 aa12.99□□□□□ -0.33
SSU72-203ENST00000378725 TMEM218A2RU14 115 aa12.98□□□□□ -0.33
SSU72-203ENST00000378725 NTF3P20783 257 aa12.98□□□□□ -0.33
SSU72-203ENST00000378725 RHOHQ15669 191 aa12.98□□□□□ -0.33
SSU72-203ENST00000378725 FAM74A4Q5TZK3 123 aa12.98□□□□□ -0.33
SSU72-203ENST00000378725 NACAE9PAV3 2078 aa12.98□□□□□ -0.33
SSU72-203ENST00000378725 LOC100131303A0A0U1RQF7 123 aa12.97□□□□□ -0.33
SSU72-203ENST00000378725 CCL18P55774 89 aa12.97□□□□□ -0.33
SSU72-203ENST00000378725 FAM3BP58499 235 aaPredicted RBP12.97□□□□□ -0.33
SSU72-203ENST00000378725 ESRGQ1W209 222 aa12.97□□□□□ -0.33
SSU72-203ENST00000378725 C14orf178Q8N769 122 aaPredicted RBP12.97□□□□□ -0.33
SSU72-203ENST00000378725 LINC00315P59091 139 aa12.96□□□□□ -0.33
SSU72-203ENST00000378725 RAB4BP61018 213 aa12.96□□□□□ -0.33
SSU72-203ENST00000378725 PNRC1Q12796 327 aaPredicted RBP12.96□□□□□ -0.33
SSU72-203ENST00000378725 NEGR1Q7Z3B1 354 aa12.96□□□□□ -0.33
SSU72-203ENST00000378725 AP1S3Q96PC3 154 aa12.96□□□□□ -0.33
SSU72-203ENST00000378725 LINC00588Q9Y4M8 146 aa12.96□□□□□ -0.33
SSU72-203ENST00000378725 ALMS1Q8TCU4 4167 aa12.96□□□□□ -0.34
SSU72-203ENST00000378725 SRIP30626 198 aa12.95□□□□□ -0.34
SSU72-203ENST00000378725 SH2D6Q7Z4S9 175 aa12.95□□□□□ -0.34
SSU72-203ENST00000378725 UBE2DNLQ8IWF7 75 aa12.95□□□□□ -0.34
SSU72-203ENST00000378725 PGLYRP4Q96LB8 373 aa12.95□□□□□ -0.34
SSU72-203ENST00000378725 HIGD1CA8MV81 97 aa12.94□□□□□ -0.34
SSU72-203ENST00000378725 TRGC1P0CF51 173 aa12.94□□□□□ -0.34
SSU72-203ENST00000378725 SMIM17P0DL12 118 aa12.94□□□□□ -0.34
SSU72-203ENST00000378725 ADCYAP1P18509 176 aa12.94□□□□□ -0.34
SSU72-203ENST00000378725 TWIST1Q15672 202 aa12.94□□□□□ -0.34
SSU72-203ENST00000378725 LYPD5Q6UWN5 251 aa12.94□□□□□ -0.34
SSU72-203ENST00000378725 SMIM27A0A1W2PRY6 76 aa12.93□□□□□ -0.34
SSU72-203ENST00000378725 EVI2AP22794 236 aa12.93□□□□□ -0.34
SSU72-203ENST00000378725 Q9UF83 564 aa12.93□□□□□ -0.34
SSU72-203ENST00000378725 DNAH1Q9P2D7 4330 aa12.92□□□□□ -0.34
SSU72-203ENST00000378725 TRBV10-1A0A0K0K1A3 114 aa12.92□□□□□ -0.34
SSU72-203ENST00000378725 LINC00694P0DN24 101 aa12.92□□□□□ -0.34
SSU72-203ENST00000378725 NUP35Q8NFH5 326 aa12.92□□□□□ -0.34
SSU72-203ENST00000378725 UPK3BQ9BT76 320 aa12.92□□□□□ -0.34
SSU72-203ENST00000378725 SEC11CQ9BY50 192 aa12.92□□□□□ -0.34
SSU72-203ENST00000378725 SACSQ9NZJ4 4579 aa12.92□□□□□ -0.34
SSU72-203ENST00000378725 NAT8BQ9UHF3 227 aa12.92□□□□□ -0.34
SSU72-203ENST00000378725 A0A1B0GUT8 65 aa12.91□□□□□ -0.34
SSU72-203ENST00000378725 F8W036 122 aa12.91□□□□□ -0.34
SSU72-203ENST00000378725 PPP1R2P9O14990 202 aa12.91□□□□□ -0.34
SSU72-203ENST00000378725 ZNF56Q15929 161 aa12.91□□□□□ -0.34
SSU72-203ENST00000378725 ZNRF2Q8NHG8 242 aa12.91□□□□□ -0.34
SSU72-203ENST00000378725 DPH3P1Q9H4G8 78 aa12.91□□□□□ -0.34
SSU72-203ENST00000378725 MRPS16Q9Y3D3 137 aaKnown RBP12.91□□□□□ -0.34
SSU72-203ENST00000378725 TIRAPP58753 221 aa12.9□□□□□ -0.34
SSU72-203ENST00000378725 BORCS7Q96B45 105 aa12.9□□□□□ -0.34
SSU72-203ENST00000378725 GAGE12JA6NER3 117 aa12.89□□□□□ -0.35
SSU72-203ENST00000378725 F5H697 171 aa12.89□□□□□ -0.35
SSU72-203ENST00000378725 GAGE1Q13065 139 aa12.89□□□□□ -0.35
SSU72-203ENST00000378725 GAGE4Q13068 117 aa12.89□□□□□ -0.35
SSU72-203ENST00000378725 GAGE5Q13069 117 aa12.89□□□□□ -0.35
SSU72-203ENST00000378725 GAGE13Q4V321 117 aa12.89□□□□□ -0.35
SSU72-203ENST00000378725 C10orf91Q5T1B1 145 aa12.89□□□□□ -0.35
SSU72-203ENST00000378725 ANAPC16Q96DE5 110 aa12.89□□□□□ -0.35
SSU72-203ENST00000378725 VPS13DQ5THJ4 4388 aa12.88□□□□□ -0.35
SSU72-203ENST00000378725 MT-ND4LP03901 98 aa12.88□□□□□ -0.35
SSU72-203ENST00000378725 ATP6V0E2Q8NHE4 81 aa12.88□□□□□ -0.35
SSU72-203ENST00000378725 M0QY20 66 aa12.87□□□□□ -0.35
SSU72-203ENST00000378725 MGPP08493 103 aa12.87□□□□□ -0.35
SSU72-203ENST00000378725 RIGQ13278 110 aa12.87□□□□□ -0.35
SSU72-203ENST00000378725 SMIM15Q7Z3B0 74 aa12.87□□□□□ -0.35
SSU72-203ENST00000378725 TRBV7-3A0A075B6L6 115 aa12.86□□□□□ -0.35
SSU72-203ENST00000378725 RPL36AP83881 106 aaKnown RBP12.86□□□□□ -0.35
SSU72-203ENST00000378725 SUMO4Q6EEV6 95 aa12.86□□□□□ -0.35
SSU72-203ENST00000378725 NEXN-AS1Q8NBZ9 246 aa12.86□□□□□ -0.35
SSU72-203ENST00000378725 RPL36ALQ969Q0 106 aaKnown RBP12.86□□□□□ -0.35
SSU72-203ENST00000378725 GTSF1LQ9H1H1 148 aa12.86□□□□□ -0.35
SSU72-203ENST00000378725 Q9H8V8 135 aa12.86□□□□□ -0.35
SSU72-203ENST00000378725 RYR2Q92736 4967 aa12.86□□□□□ -0.35
SSU72-203ENST00000378725 UBE2D3P61077 147 aa12.85□□□□□ -0.35
SSU72-203ENST00000378725 UBE2D2P62837 147 aa12.85□□□□□ -0.35
SSU72-203ENST00000378725 TMEM191AQ9H0A3 160 aa12.85□□□□□ -0.35
SSU72-203ENST00000378725 CARHSP1Q9Y2V2 147 aaKnown RBP12.85□□□□□ -0.35
SSU72-203ENST00000378725 H7C1H1 209 aa12.84□□□□□ -0.35
SSU72-203ENST00000378725 RYR3Q15413 4870 aa12.83□□□□□ -0.36
SSU72-203ENST00000378725 Q6ZR54 194 aa12.83□□□□□ -0.36
SSU72-203ENST00000378725 DNAJC30Q96LL9 226 aa12.83□□□□□ -0.36
SSU72-203ENST00000378725 HYDINQ4G0P3 5121 aa12.83□□□□□ -0.36
SSU72-203ENST00000378725 IGLV2-18A0A075B6J9 118 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms