RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 BVES-AS1Q5T3Y7 98 aa5.59□□□□□ -1.51
VPS13A-202ENST00000357409 Q6ZUT4 128 aa5.59□□□□□ -1.51
VPS13A-202ENST00000357409 PTH2Q96A98 100 aa5.59□□□□□ -1.51
VPS13A-202ENST00000357409 ANKRD39Q53RE8 183 aa5.59□□□□□ -1.51
VPS13A-202ENST00000357409 APC2O95996 2303 aa5.59□□□□□ -1.52
VPS13A-202ENST00000357409 CACNA1EQ15878 2313 aa5.59□□□□□ -1.52
VPS13A-202ENST00000357409 ZNF80P51504 273 aaPredicted RBP5.59□□□□□ -1.52
VPS13A-202ENST00000357409 SLC25A29Q8N8R3 303 aa5.59□□□□□ -1.52
VPS13A-202ENST00000357409 WI2-2373I1.2A0A1W2PRP0 233 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 LOXL1Q08397 574 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-202ENST00000357409 TRBV6-6A0A0A6YYG2 114 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 F8VRH5 84 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 PRR4Q16378 134 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 NREPQ16612 68 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 IGLV11-55A0A075B6I3 123 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 GTF3C1Q12789 2109 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 USF3Q68DE3 2245 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 UBE2D4Q9Y2X8 147 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 Q6ZSV7 163 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 ODF3L1Q8IXM7 274 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 ANKRD29Q8N6D5 301 aa5.58□□□□□ -1.52
VPS13A-202ENST00000357409 UBE2V1Q13404 147 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 PDE6HQ13956 83 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 OR11H6Q8NGC7 330 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 TRBV7-3A0A075B6L6 115 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 ANKRD36A6QL64 1941 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 MYCNOSP40205 109 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 TP73-AS1Q9UF72 201 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 SCN10AQ9Y5Y9 1956 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 SMIM27A0A1W2PRY6 76 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 MRPL52Q86TS9 123 aaKnown RBP5.57□□□□□ -1.52
VPS13A-202ENST00000357409 DIDO1Q9BTC0 2240 aaKnown RBP5.57□□□□□ -1.52
VPS13A-202ENST00000357409 UBE2D1P51668 147 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 ORMDL1Q9P0S3 153 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 SS18L2Q9UHA2 77 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 DEFB116Q30KQ4 102 aa5.57□□□□□ -1.52
VPS13A-202ENST00000357409 LAMA3Q16787 3333 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 SVIPQ8NHG7 77 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 DOCK7Q96N67 2140 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 TEX22C9J3V5 150 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 RTTNQ86VV8 2226 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 PRO0255Q9UI72 69 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 TP53BP1Q12888 1972 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-202ENST00000357409 C3orf84H3BNL1 204 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 HILS1P60008 231 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 LINC00311Q8N616 119 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 DLEC1Q9Y238 1755 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 IGHG2P01859 326 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 CASC2Q6XLA1 102 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 TRIOBPQ9H2D6 2365 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 SIPA1L3O60292 1781 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-202ENST00000357409 A6NDX4 124 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 NDUFA7O95182 113 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 CFPP27918 469 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 LTAP01374 205 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 CFC1BP0CG36 223 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 CFC1P0CG37 223 aa5.56□□□□□ -1.52
VPS13A-202ENST00000357409 COL5A3P25940 1745 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-202ENST00000357409 LMO4P61968 165 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 NACAE9PAV3 2078 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 BRCA2P51587 3418 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 TRAV23DV6A0A075B6W5 121 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 NDUFA1O15239 70 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 REG3AQ06141 175 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 DAZ2Q13117 558 aaKnown RBP5.55□□□□□ -1.52
VPS13A-202ENST00000357409 IGFL2Q6UWQ7 119 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 DAZ4Q86SG3 579 aaKnown RBP5.55□□□□□ -1.52
VPS13A-202ENST00000357409 DAZ3Q9NR90 486 aaKnown RBP5.55□□□□□ -1.52
VPS13A-202ENST00000357409 WFDC2Q14508 124 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 C1orf158Q8N1D5 194 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 C20orf173Q96LM9 149 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 PRSS47A8MTI9 375 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 C4orf3Q8WVX3 66 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 ZFAND3Q9H8U3 227 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 NDUFB1O75438 58 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 LINC00322Q6ZN03 302 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-202ENST00000357409 KAAG1Q9UBP8 84 aa5.55□□□□□ -1.52
VPS13A-202ENST00000357409 AVPP01185 164 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 SZT2Q5T011 3432 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.54□□□□□ -1.529e-7■■■■■ 31.2
VPS13A-202ENST00000357409 B5MCH6 92 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 IGLV2-14P01704 120 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 LGALS9BQ3B8N2 356 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 LGALS9CQ6DKI2 356 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 FAM30AQ9NZY2 134 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 PTPRDP23468 1912 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 NFE4Q86UQ8 179 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 CIRBP-AS1Q8TBR5 109 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 Q6YL49 198 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 SEC16AO15027 2179 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 ZNF747Q9BV97 191 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 RP1L1Q8IWN7 2480 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-202ENST00000357409 COL24A1Q17RW2 1714 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 C9orf118A6NHY6 69 aa5.54□□□□□ -1.52
VPS13A-202ENST00000357409 LINC00467Q9BRT7 94 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 COX8AP10176 69 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 LINC01006Q8NI28 216 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 ABCA4P78363 2273 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 A0A1W2PPM0 123 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 G3V4G9 280 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms