RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TCTEX1D4Q5JR98 221 aa16.83■□□□□ 0.29
TRIM28-202ENST00000341753 IGHV3-11P01762 117 aa16.83■□□□□ 0.28
TRIM28-202ENST00000341753 UBE2E1P51965 193 aa16.83■□□□□ 0.28
TRIM28-202ENST00000341753 C5orf56Q8N8D9 126 aa16.82■□□□□ 0.28
TRIM28-202ENST00000341753 KIR2DL4Q99706 377 aa16.82■□□□□ 0.28
TRIM28-202ENST00000341753 CFC1BP0CG36 223 aa16.82■□□□□ 0.28
TRIM28-202ENST00000341753 CFC1P0CG37 223 aa16.82■□□□□ 0.28
TRIM28-202ENST00000341753 ATP6V0E2Q8NHE4 81 aa16.82■□□□□ 0.28
TRIM28-202ENST00000341753 LENEPQ9Y5L5 61 aa16.82■□□□□ 0.28
TRIM28-202ENST00000341753 Q6ZUT4 128 aa16.81■□□□□ 0.28
TRIM28-202ENST00000341753 PRORYQ9H606 182 aa16.81■□□□□ 0.28
TRIM28-202ENST00000341753 TRAV41A0A0B4J266 112 aa16.81■□□□□ 0.28
TRIM28-202ENST00000341753 F5H697 171 aa16.8■□□□□ 0.28
TRIM28-202ENST00000341753 KLK9Q2XQG4 91 aa16.8■□□□□ 0.28
TRIM28-202ENST00000341753 KLK9Q9UKQ9 250 aa16.8■□□□□ 0.28
TRIM28-202ENST00000341753 SCGB1C2P0DMR2 95 aa16.8■□□□□ 0.28
TRIM28-202ENST00000341753 CRYBA4P53673 196 aa16.8■□□□□ 0.28
TRIM28-202ENST00000341753 IGIPA6NJ69 53 aa16.79■□□□□ 0.28
TRIM28-202ENST00000341753 HERVK_113P61574 105 aa16.79■□□□□ 0.28
TRIM28-202ENST00000341753 ZNRF2Q8NHG8 242 aa16.79■□□□□ 0.28
TRIM28-202ENST00000341753 SOCS3O14543 225 aa16.79■□□□□ 0.28
TRIM28-202ENST00000341753 OVOL1O14753 267 aa16.79■□□□□ 0.28
TRIM28-202ENST00000341753 BRD3OSQ6XYD6 125 aa16.79■□□□□ 0.28
TRIM28-202ENST00000341753 RAX2Q96IS3 184 aa16.79■□□□□ 0.28
TRIM28-202ENST00000341753 OPRPNQ99935 248 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-202ENST00000341753 H7C2G1 150 aa16.78■□□□□ 0.28
TRIM28-202ENST00000341753 IGHV3-30P01768 117 aa16.78■□□□□ 0.28
TRIM28-202ENST00000341753 IGHV4-39P01824 125 aa16.78■□□□□ 0.28
TRIM28-202ENST00000341753 IGHV3-30-5P0DP03 117 aa16.78■□□□□ 0.28
TRIM28-202ENST00000341753 LINC00315P59091 139 aa16.78■□□□□ 0.28
TRIM28-202ENST00000341753 PMVKQ15126 192 aa16.78■□□□□ 0.28
TRIM28-202ENST00000341753 SUMO4Q6EEV6 95 aa16.78■□□□□ 0.28
TRIM28-202ENST00000341753 TEN1Q86WV5 123 aa16.78■□□□□ 0.28
TRIM28-202ENST00000341753 PPDPFLQ8WWR9 84 aa16.78■□□□□ 0.28
TRIM28-202ENST00000341753 IGHV3-64A0A075B6Q5 118 aa16.77■□□□□ 0.28
TRIM28-202ENST00000341753 USP9XQ93008 2570 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-202ENST00000341753 NPFFO15130 113 aa16.77■□□□□ 0.28
TRIM28-202ENST00000341753 FAM74A4Q5TZK3 123 aa16.77■□□□□ 0.28
TRIM28-202ENST00000341753 KIF25-AS1Q9Y6Z4 181 aa16.77■□□□□ 0.28
TRIM28-202ENST00000341753 ANKRD29Q8N6D5 301 aa16.76■□□□□ 0.27
TRIM28-202ENST00000341753 ZNF256Q9Y2P7 627 aaPredicted RBP16.76■□□□□ 0.27
TRIM28-202ENST00000341753 IGSF10Q6WRI0 2623 aa16.76■□□□□ 0.27
TRIM28-202ENST00000341753 EDN2P20800 178 aa16.76■□□□□ 0.27
TRIM28-202ENST00000341753 A8MWV9 139 aa16.75■□□□□ 0.27
TRIM28-202ENST00000341753 C10orf126Q8N4M7 172 aa16.75■□□□□ 0.27
TRIM28-202ENST00000341753 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.74■□□□□ 0.272e-9■■■■■ 30.3
TRIM28-202ENST00000341753 SDHAF1A6NFY7 115 aa16.74■□□□□ 0.27
TRIM28-202ENST00000341753 CRIP2P52943 208 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-202ENST00000341753 SLC25A29Q8N8R3 303 aa16.74■□□□□ 0.27
TRIM28-202ENST00000341753 FAM19A4Q96LR4 140 aa16.74■□□□□ 0.27
TRIM28-202ENST00000341753 POLR2KP53803 58 aaKnown RBP16.73■□□□□ 0.27
TRIM28-202ENST00000341753 TRPT1Q86TN4 253 aaKnown RBP16.73■□□□□ 0.27
TRIM28-202ENST00000341753 PPP1R17O96001 155 aa16.73■□□□□ 0.27
TRIM28-202ENST00000341753 LYRM7Q5U5X0 104 aa16.73■□□□□ 0.27
TRIM28-202ENST00000341753 ZFYVE26Q68DK2 2539 aa16.72■□□□□ 0.27
TRIM28-202ENST00000341753 J3QQQ9 107 aa16.72■□□□□ 0.27
TRIM28-202ENST00000341753 AMELXQ99217 191 aa16.72■□□□□ 0.27
TRIM28-202ENST00000341753 PRO1854Q9UHT4 67 aa16.72■□□□□ 0.27
TRIM28-202ENST00000341753 IGHV1-69DA0A0B4J2H0 117 aa16.72■□□□□ 0.27
TRIM28-202ENST00000341753 IGHV4-61A0A0C4DH41 118 aa16.72■□□□□ 0.27
TRIM28-202ENST00000341753 FAM223BA6NKX1 122 aa16.72■□□□□ 0.27
TRIM28-202ENST00000341753 EIF4EBP3O60516 100 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-202ENST00000341753 LY6EQ16553 131 aa16.72■□□□□ 0.27
TRIM28-202ENST00000341753 FAM223AQ8IWN6 122 aa16.72■□□□□ 0.27
TRIM28-202ENST00000341753 TRAV12-3A0A0B4J271 114 aa16.71■□□□□ 0.27
TRIM28-202ENST00000341753 LGALS3P17931 250 aaKnown RBP16.71■□□□□ 0.27
TRIM28-202ENST00000341753 ACACBO00763 2458 aa16.71■□□□□ 0.27
TRIM28-202ENST00000341753 A4D1N5 150 aa16.71■□□□□ 0.27
TRIM28-202ENST00000341753 MED14OSP0DP75 135 aa16.71■□□□□ 0.27
TRIM28-202ENST00000341753 GATA3P23771 443 aa16.71■□□□□ 0.27
TRIM28-202ENST00000341753 PAPPA-AS1Q5QFB9 102 aa16.71■□□□□ 0.27
TRIM28-202ENST00000341753 FAM159AQ6UWV7 190 aa16.71■□□□□ 0.27
TRIM28-202ENST00000341753 CENPEQ02224 2701 aa16.71■□□□□ 0.27
TRIM28-202ENST00000341753 MYO18BQ8IUG5 2567 aa16.71■□□□□ 0.26
TRIM28-202ENST00000341753 CACNA1AO00555 2505 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 VCYO14598 125 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 RNF183Q96D59 192 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 RHPN1-AS1Q9BWJ2 59 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 MOB4Q9Y3A3 225 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 TRAV2A0A0B4J234 112 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 C9JAW5 83 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 NDUFA4O00483 81 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 ZNF688P0C7X2 276 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 CSPG4Q6UVK1 2322 aa16.7■□□□□ 0.26
TRIM28-202ENST00000341753 IGKV3-20P01619 116 aa16.69■□□□□ 0.26
TRIM28-202ENST00000341753 TRBV20-1A0A075B6N2 111 aa16.69■□□□□ 0.26
TRIM28-202ENST00000341753 IGHV4OR15-8A0A075B7B6 117 aa16.69■□□□□ 0.26
TRIM28-202ENST00000341753 A0A087WW49 117 aa16.69■□□□□ 0.26
TRIM28-202ENST00000341753 ZNF876PQ49A33 203 aa16.69■□□□□ 0.26
TRIM28-202ENST00000341753 C19orf54Q5BKX5 351 aa16.69■□□□□ 0.26
TRIM28-202ENST00000341753 ZNF580Q9UK33 172 aa16.69■□□□□ 0.26
TRIM28-202ENST00000341753 POM121L12Q8N7R1 296 aa16.69■□□□□ 0.26
TRIM28-202ENST00000341753 TMEM141Q96I45 108 aa16.68■□□□□ 0.26
TRIM28-202ENST00000341753 POLQO75417 2590 aa16.68■□□□□ 0.26
TRIM28-202ENST00000341753 NXPH4O95158 308 aa16.68■□□□□ 0.26
TRIM28-202ENST00000341753 IGHV4-38-2P0DP08 117 aa16.68■□□□□ 0.26
TRIM28-202ENST00000341753 PF4V1P10720 104 aa16.68■□□□□ 0.26
TRIM28-202ENST00000341753 TIMM17AQ99595 171 aa16.67■□□□□ 0.26
TRIM28-202ENST00000341753 SLC25A20O43772 301 aa16.67■□□□□ 0.26
TRIM28-202ENST00000341753 SBSPONQ8IVN8 264 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms