RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 FAM231DQ6ZW35 169 aa11.02□□□□□ -0.65
CCDC28A-201ENST00000332797 SLC25A29Q8N8R3 303 aa11.02□□□□□ -0.65
CCDC28A-201ENST00000332797 SRIP30626 198 aa11.01□□□□□ -0.65
CCDC28A-201ENST00000332797 SOHLH1Q5JUK2 328 aa11.01□□□□□ -0.65
CCDC28A-201ENST00000332797 UFSP1Q6NVU6 142 aa11.01□□□□□ -0.65
CCDC28A-201ENST00000332797 SLC7A5P1Q8MH63 180 aa11.01□□□□□ -0.65
CCDC28A-201ENST00000332797 LINC00588Q9Y4M8 146 aa11.01□□□□□ -0.65
CCDC28A-201ENST00000332797 KMT2AQ03164 3969 aa11.01□□□□□ -0.65
CCDC28A-201ENST00000332797 TRBV6-4A0A1B0GX49 114 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 A0A1W2PPQ1 181 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 RHOHQ15669 191 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 ADIRFQ15847 76 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 ESRGQ1W209 222 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 LYZL1Q6UWQ5 148 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 Q6ZSN1 163 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 PRADC1Q9BSG0 188 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 NAT8Q9UHE5 227 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 F2Z2F3 143 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 CRYGDP07320 174 aa11□□□□□ -0.65
CCDC28A-201ENST00000332797 RPL23P62829 140 aaKnown RBP11□□□□□ -0.65
CCDC28A-201ENST00000332797 DNAH6Q9C0G6 4158 aa10.99□□□□□ -0.65
CCDC28A-201ENST00000332797 FAM3BP58499 235 aaPredicted RBP10.99□□□□□ -0.65
CCDC28A-201ENST00000332797 CACNG7P62955 275 aa10.99□□□□□ -0.65
CCDC28A-201ENST00000332797 NEGR1Q7Z3B1 354 aa10.99□□□□□ -0.65
CCDC28A-201ENST00000332797 ISOC2Q96AB3 205 aa10.99□□□□□ -0.65
CCDC28A-201ENST00000332797 AP1S3Q96PC3 154 aa10.99□□□□□ -0.65
CCDC28A-201ENST00000332797 IGLV2-18A0A075B6J9 118 aa10.98□□□□□ -0.65
CCDC28A-201ENST00000332797 CTRLP40313 264 aa10.98□□□□□ -0.65
CCDC28A-201ENST00000332797 C14orf178Q8N769 122 aaPredicted RBP10.98□□□□□ -0.65
CCDC28A-201ENST00000332797 C15orf54Q8N8G6 183 aa10.98□□□□□ -0.65
CCDC28A-201ENST00000332797 OSTCQ9NRP0 149 aa10.98□□□□□ -0.65
CCDC28A-201ENST00000332797 A8MWL6 223 aa10.97□□□□□ -0.65
CCDC28A-201ENST00000332797 SMIM17P0DL12 118 aa10.97□□□□□ -0.65
CCDC28A-201ENST00000332797 ZNF56Q15929 161 aa10.97□□□□□ -0.65
CCDC28A-201ENST00000332797 CT83Q5H943 113 aa10.97□□□□□ -0.65
CCDC28A-201ENST00000332797 GTSF1Q8WW33 167 aa10.97□□□□□ -0.65
CCDC28A-201ENST00000332797 MSRB1Q9NZV6 116 aa10.97□□□□□ -0.65
CCDC28A-201ENST00000332797 MRPS16Q9Y3D3 137 aaKnown RBP10.97□□□□□ -0.65
CCDC28A-201ENST00000332797 LYPD5Q6UWN5 251 aa10.96□□□□□ -0.65
CCDC28A-201ENST00000332797 ZNRF2Q8NHG8 242 aa10.96□□□□□ -0.65
CCDC28A-201ENST00000332797 TMEM218A2RU14 115 aa10.95□□□□□ -0.66
CCDC28A-201ENST00000332797 GAGE12JA6NER3 117 aa10.95□□□□□ -0.66
CCDC28A-201ENST00000332797 M0R2N4 97 aa10.95□□□□□ -0.66
CCDC28A-201ENST00000332797 NTF3P20783 257 aa10.95□□□□□ -0.66
CCDC28A-201ENST00000332797 GAGE1Q13065 139 aa10.95□□□□□ -0.66
CCDC28A-201ENST00000332797 GAGE4Q13068 117 aa10.95□□□□□ -0.66
CCDC28A-201ENST00000332797 GAGE5Q13069 117 aa10.95□□□□□ -0.66
CCDC28A-201ENST00000332797 GAGE13Q4V321 117 aa10.95□□□□□ -0.66
CCDC28A-201ENST00000332797 SH2D6Q7Z4S9 175 aa10.95□□□□□ -0.66
CCDC28A-201ENST00000332797 F5H697 171 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 RAB4BP61018 213 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 TWIST1Q15672 202 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 WDR73Q6P4I2 378 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 OR10G8Q8NGN5 311 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 TSKUQ8WUA8 353 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 PGLYRP4Q96LB8 373 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 UPK3BQ9BT76 320 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 Q9UF83 564 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 V9GYV3 84 aa10.94□□□□□ -0.66
CCDC28A-201ENST00000332797 MGPP08493 103 aa10.93□□□□□ -0.66
CCDC28A-201ENST00000332797 TRGC1P0CF51 173 aa10.93□□□□□ -0.66
CCDC28A-201ENST00000332797 CNFNQ9BYD5 112 aa10.93□□□□□ -0.66
CCDC28A-201ENST00000332797 KIF25-AS1Q9Y6Z4 181 aa10.93□□□□□ -0.66
CCDC28A-201ENST00000332797 SEC11CQ9BY50 192 aa10.93□□□□□ -0.66
CCDC28A-201ENST00000332797 GFRA4Q9GZZ7 299 aa10.93□□□□□ -0.66
CCDC28A-201ENST00000332797 Q9H8V8 135 aa10.93□□□□□ -0.66
CCDC28A-201ENST00000332797 HIGD1CA8MV81 97 aa10.92□□□□□ -0.66
CCDC28A-201ENST00000332797 F8W036 122 aa10.92□□□□□ -0.66
CCDC28A-201ENST00000332797 ATP6V1G1O75348 118 aa10.92□□□□□ -0.66
CCDC28A-201ENST00000332797 LINC00694P0DN24 101 aa10.92□□□□□ -0.66
CCDC28A-201ENST00000332797 EVI2AP22794 236 aa10.92□□□□□ -0.66
CCDC28A-201ENST00000332797 S100A1P23297 94 aa10.92□□□□□ -0.66
CCDC28A-201ENST00000332797 ATP6V0E2Q8NHE4 81 aa10.92□□□□□ -0.66
CCDC28A-201ENST00000332797 BORCS7Q96B45 105 aa10.92□□□□□ -0.66
CCDC28A-201ENST00000332797 LINC00315P59091 139 aa10.91□□□□□ -0.66
CCDC28A-201ENST00000332797 TRBV10-1A0A0K0K1A3 114 aa10.9□□□□□ -0.66
CCDC28A-201ENST00000332797 NBDYA0A0U1RRE5 68 aa10.9□□□□□ -0.66
CCDC28A-201ENST00000332797 FAM231BA6NCW3 169 aa10.9□□□□□ -0.66
CCDC28A-201ENST00000332797 FOXA3P55318 350 aaPredicted RBP10.9□□□□□ -0.66
CCDC28A-201ENST00000332797 C10orf91Q5T1B1 145 aa10.9□□□□□ -0.66
CCDC28A-201ENST00000332797 DPH3P1Q9H4G8 78 aa10.9□□□□□ -0.66
CCDC28A-201ENST00000332797 SIVA1O15304 175 aa10.89□□□□□ -0.67
CCDC28A-201ENST00000332797 TIRAPP58753 221 aa10.89□□□□□ -0.67
CCDC28A-201ENST00000332797 RPL36AP83881 106 aaKnown RBP10.89□□□□□ -0.67
CCDC28A-201ENST00000332797 Q6ZR54 194 aa10.89□□□□□ -0.67
CCDC28A-201ENST00000332797 SMIM15Q7Z3B0 74 aa10.89□□□□□ -0.67
CCDC28A-201ENST00000332797 RPL36ALQ969Q0 106 aaKnown RBP10.89□□□□□ -0.67
CCDC28A-201ENST00000332797 GTSF1LQ9H1H1 148 aa10.89□□□□□ -0.67
CCDC28A-201ENST00000332797 CARHSP1Q9Y2V2 147 aaKnown RBP10.89□□□□□ -0.67
CCDC28A-201ENST00000332797 A0A1B0GUT8 65 aa10.88□□□□□ -0.67
CCDC28A-201ENST00000332797 PNRC1Q12796 327 aaPredicted RBP10.88□□□□□ -0.67
CCDC28A-201ENST00000332797 SUMO4Q6EEV6 95 aa10.88□□□□□ -0.67
CCDC28A-201ENST00000332797 WFDC10BQ8IUB3 73 aa10.88□□□□□ -0.67
CCDC28A-201ENST00000332797 NEXN-AS1Q8NBZ9 246 aa10.88□□□□□ -0.67
CCDC28A-201ENST00000332797 TRBV7-3A0A075B6L6 115 aa10.87□□□□□ -0.67
CCDC28A-201ENST00000332797 NUP35Q8NFH5 326 aa10.87□□□□□ -0.67
CCDC28A-201ENST00000332797 NAT8BQ9UHF3 227 aa10.87□□□□□ -0.67
CCDC28A-201ENST00000332797 SMIM27A0A1W2PRY6 76 aa10.87□□□□□ -0.67
CCDC28A-201ENST00000332797 H7C1H1 209 aa10.87□□□□□ -0.67
CCDC28A-201ENST00000332797 ADCYAP1P18509 176 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms