RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 PRR9Q5T870 116 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 PTH2Q96A98 100 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 SAMD10Q9BYL1 202 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 KRTDAPP60985 99 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 BAGE3Q86Y29 109 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 SPATA25Q9BR10 227 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 CT83Q5H943 113 aa7.4□□□□□ -1.22
HMGB3-201ENST00000325307 TMEM189A5PLL7 270 aa7.4□□□□□ -1.22
HMGB3-201ENST00000325307 RPL35AP18077 110 aaKnown RBP7.4□□□□□ -1.22
HMGB3-201ENST00000325307 AMMECR1LQ6DCA0 310 aa7.4□□□□□ -1.22
HMGB3-201ENST00000325307 TRAV12-3A0A0B4J271 114 aa7.4□□□□□ -1.23
HMGB3-201ENST00000325307 COX8CQ7Z4L0 72 aa7.4□□□□□ -1.23
HMGB3-201ENST00000325307 ZNF575Q86XF7 245 aa7.4□□□□□ -1.23
HMGB3-201ENST00000325307 FAM19A4Q96LR4 140 aa7.4□□□□□ -1.23
HMGB3-201ENST00000325307 ODF3Q96PU9 254 aa7.4□□□□□ -1.23
HMGB3-201ENST00000325307 ERG28Q9UKR5 140 aa7.4□□□□□ -1.23
HMGB3-201ENST00000325307 TRAV21A0A0B4J279 112 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 HLA-DQA1P01909 254 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 GAGE5Q13069 117 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 GAGE6Q13070 117 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 BVES-AS1Q5T3Y7 98 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 RASL11AQ6T310 242 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 Q6ZQT7 251 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 RBMY1BA6NDE4 496 aaKnown RBP7.39□□□□□ -1.23
HMGB3-201ENST00000325307 RBMY1EA6NEQ0 496 aaKnown RBP7.39□□□□□ -1.23
HMGB3-201ENST00000325307 A8MWL6 223 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 RBMY1DP0C7P1 496 aaKnown RBP7.39□□□□□ -1.23
HMGB3-201ENST00000325307 SRIP30626 198 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 MUC21Q5SSG8 566 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 AMTNQ6UX39 209 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 C19orf73Q9NVV2 129 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 CSDC2Q9Y534 153 aaKnown RBP7.39□□□□□ -1.23
HMGB3-201ENST00000325307 C7orf71A4D174 169 aa7.39□□□□□ -1.23
HMGB3-201ENST00000325307 KLLNB2CW77 178 aa7.38□□□□□ -1.23
HMGB3-201ENST00000325307 GFRA4Q9GZZ7 299 aa7.38□□□□□ -1.23
HMGB3-201ENST00000325307 ST20Q9HBF5 79 aa7.38□□□□□ -1.23
HMGB3-201ENST00000325307 AMTP48728 403 aa7.38□□□□□ -1.23
HMGB3-201ENST00000325307 TRPT1Q86TN4 253 aaKnown RBP7.38□□□□□ -1.23
HMGB3-201ENST00000325307 XCL2Q9UBD3 114 aa7.38□□□□□ -1.23
HMGB3-201ENST00000325307 APCSP02743 223 aa7.38□□□□□ -1.23
HMGB3-201ENST00000325307 HSD52Q0P140 79 aa7.38□□□□□ -1.23
HMGB3-201ENST00000325307 ATP5L2Q7Z4Y8 100 aa7.38□□□□□ -1.23
HMGB3-201ENST00000325307 PGLYRP4Q96LB8 373 aa7.38□□□□□ -1.23
HMGB3-201ENST00000325307 C18orf32Q8TCD1 76 aa7.37□□□□□ -1.23
HMGB3-201ENST00000325307 RNF183Q96D59 192 aa7.37□□□□□ -1.23
HMGB3-201ENST00000325307 MRPL16Q9NX20 251 aaKnown RBP7.37□□□□□ -1.23
HMGB3-201ENST00000325307 HTN1P15515 57 aa7.37□□□□□ -1.23
HMGB3-201ENST00000325307 FOXA3P55318 350 aaPredicted RBP7.37□□□□□ -1.23
HMGB3-201ENST00000325307 Q6AWC8 147 aa7.37□□□□□ -1.23
HMGB3-201ENST00000325307 ERASQ7Z444 233 aa7.37□□□□□ -1.23
HMGB3-201ENST00000325307 SPATA12Q7Z6I5 190 aa7.37□□□□□ -1.23
HMGB3-201ENST00000325307 PPDPFQ9H3Y8 114 aa7.37□□□□□ -1.23
HMGB3-201ENST00000325307 C11orf21Q9P2W6 132 aa7.37□□□□□ -1.23
HMGB3-201ENST00000325307 A0A087WX48 190 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 GAGE12HA6NDE8 117 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 CAMPP49913 170 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 FAM159AQ6UWV7 190 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 URB1-AS1Q96HZ7 61 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 TIMM8BQ9Y5J9 83 aaPredicted RBP7.36□□□□□ -1.23
HMGB3-201ENST00000325307 A8MTW9 85 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 INSP01308 110 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 HBBP68871 147 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 PKD1L1Q8TDX9 2849 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 IGHV3OR16-12A0A075B7B8 117 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 FAM231BA6NCW3 169 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 ANXA2RQ3ZCQ2 193 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 LINC01559Q495D7 138 aa7.36□□□□□ -1.23
HMGB3-201ENST00000325307 IGKV3D-20A0A0C4DH25 116 aa7.35□□□□□ -1.23
HMGB3-201ENST00000325307 S100A4P26447 101 aaKnown RBP7.35□□□□□ -1.23
HMGB3-201ENST00000325307 MPV17L2Q567V2 206 aa7.35□□□□□ -1.23
HMGB3-201ENST00000325307 ARMS2P0C7Q2 107 aa7.35□□□□□ -1.23
HMGB3-201ENST00000325307 KRTAP10-11P60412 298 aa7.35□□□□□ -1.23
HMGB3-201ENST00000325307 LINC01587Q99440 93 aa7.35□□□□□ -1.23
HMGB3-201ENST00000325307 SCRT2Q9NQ03 307 aa7.35□□□□□ -1.23
HMGB3-201ENST00000325307 MUC21A0A0G2JKD1 596 aa7.34□□□□□ -1.23
HMGB3-201ENST00000325307 MUC21A0A140T8X8 626 aa7.34□□□□□ -1.23
HMGB3-201ENST00000325307 Q8N1Y9 231 aa7.34□□□□□ -1.23
HMGB3-201ENST00000325307 TRAV8-6A0A0B4J262 113 aa7.34□□□□□ -1.23
HMGB3-201ENST00000325307 BORCS7Q96B45 105 aa7.34□□□□□ -1.23
HMGB3-201ENST00000325307 GNRH2O43555 120 aa7.34□□□□□ -1.24
HMGB3-201ENST00000325307 PMCHP20382 165 aa7.34□□□□□ -1.24
HMGB3-201ENST00000325307 ASIPP42127 132 aa7.34□□□□□ -1.24
HMGB3-201ENST00000325307 HSPB8Q9UJY1 196 aa7.34□□□□□ -1.24
HMGB3-201ENST00000325307 IGHV1OR15-1A0A075B7D0 117 aa7.33□□□□□ -1.24
HMGB3-201ENST00000325307 MORN3Q6PF18 240 aaPredicted RBP7.33□□□□□ -1.24
HMGB3-201ENST00000325307 GATD1Q8NB37 220 aa7.33□□□□□ -1.24
HMGB3-201ENST00000325307 C1QTNF4Q9BXJ3 329 aa7.33□□□□□ -1.24
HMGB3-201ENST00000325307 H3BVH4 76 aa7.33□□□□□ -1.24
HMGB3-201ENST00000325307 RBMY1A1P0DJD3 496 aaKnown RBP7.33□□□□□ -1.24
HMGB3-201ENST00000325307 RBMY1CP0DJD4 496 aa7.33□□□□□ -1.24
HMGB3-201ENST00000325307 EGFEM1PQ0D2K5 195 aa7.33□□□□□ -1.24
HMGB3-201ENST00000325307 RBMY1FQ15415 496 aaKnown RBP7.33□□□□□ -1.24
HMGB3-201ENST00000325307 LYZL1Q6UWQ5 148 aa7.33□□□□□ -1.24
HMGB3-201ENST00000325307 B5MCH6 92 aa7.33□□□□□ -1.24
HMGB3-201ENST00000325307 FAM19A2Q8N3H0 131 aa7.33□□□□□ -1.24
HMGB3-201ENST00000325307 IGHV4-30-4P0DP06 118 aa7.32□□□□□ -1.24
HMGB3-201ENST00000325307 SAMD5Q5TGI4 173 aa7.32□□□□□ -1.24
HMGB3-201ENST00000325307 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.32□□□□□ -1.24
HMGB3-201ENST00000325307 ATOH7Q8N100 152 aa7.32□□□□□ -1.24
HMGB3-201ENST00000325307 MGAM2Q2M2H8 2515 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 362.5 ms