RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 HECTD4Q9Y4D8 3996 aa8.22□□□□□ -1.09
SCFD1-201ENST00000311943 SNAI2O43623 268 aa8.22□□□□□ -1.09
SCFD1-201ENST00000311943 IGLC6P0CF74 106 aa8.22□□□□□ -1.09
SCFD1-201ENST00000311943 IFITM2Q01629 132 aa8.22□□□□□ -1.09
SCFD1-201ENST00000311943 FUSP35637 526 aaKnown RBP eCLIP8.21□□□□□ -1.1
SCFD1-201ENST00000311943 FOXA3P55318 350 aaPredicted RBP8.21□□□□□ -1.1
SCFD1-201ENST00000311943 GTSF1Q8WW33 167 aa8.21□□□□□ -1.1
SCFD1-201ENST00000311943 PTH2Q96A98 100 aa8.21□□□□□ -1.1
SCFD1-201ENST00000311943 TRBV6-4A0A1B0GX49 114 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 A8MWV9 139 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 P01737 135 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 LINC00315P59091 139 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 SPANXN1Q5VSR9 72 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 LYZL1Q6UWQ5 148 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 DAZAP1Q96EP5 407 aaKnown RBP8.2□□□□□ -1.1
SCFD1-201ENST00000311943 TMEM250H0YL14 139 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 TNP2Q05952 138 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 SLAQ13239 276 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 ZFP82Q8N141 532 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 FER1L6-AS1Q8NA97 138 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 UPK3BQ9BT76 320 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 KIF25-AS1Q9Y6Z4 181 aa8.2□□□□□ -1.1
SCFD1-201ENST00000311943 IGHV3-38A0A0C4DH36 116 aa8.19□□□□□ -1.1
SCFD1-201ENST00000311943 OR5AL1P0C617 328 aa8.19□□□□□ -1.1
SCFD1-201ENST00000311943 EVI2AP22794 236 aa8.19□□□□□ -1.1
SCFD1-201ENST00000311943 LINC01551Q86U37 167 aa8.19□□□□□ -1.1
SCFD1-201ENST00000311943 SYT8Q8NBV8 401 aa8.19□□□□□ -1.1
SCFD1-201ENST00000311943 SMIM7Q9BQ49 75 aa8.19□□□□□ -1.1
SCFD1-201ENST00000311943 ZNF727A8MUV8 499 aa8.19□□□□□ -1.1
SCFD1-201ENST00000311943 RHOHQ15669 191 aa8.19□□□□□ -1.1
SCFD1-201ENST00000311943 DNAJC30Q96LL9 226 aa8.19□□□□□ -1.1
SCFD1-201ENST00000311943 KIAA1109Q2LD37 5005 aa8.18□□□□□ -1.1
SCFD1-201ENST00000311943 PRSS29PA6NIE9 313 aa8.18□□□□□ -1.1
SCFD1-201ENST00000311943 SIVA1O15304 175 aa8.18□□□□□ -1.1
SCFD1-201ENST00000311943 LINC00694P0DN24 101 aa8.18□□□□□ -1.1
SCFD1-201ENST00000311943 NTF3P20783 257 aa8.18□□□□□ -1.1
SCFD1-201ENST00000311943 ZNF56Q15929 161 aa8.18□□□□□ -1.1
SCFD1-201ENST00000311943 RPP21Q9H633 154 aaKnown RBP8.18□□□□□ -1.1
SCFD1-201ENST00000311943 A0A1B0GVY2 172 aa8.17□□□□□ -1.1
SCFD1-201ENST00000311943 C1orf134Q5TEV5 83 aa8.17□□□□□ -1.1
SCFD1-201ENST00000311943 ZFP2Q6ZN57 461 aa8.17□□□□□ -1.1
SCFD1-201ENST00000311943 ATP6V0E2Q8NHE4 81 aa8.17□□□□□ -1.1
SCFD1-201ENST00000311943 PRADC1Q9BSG0 188 aa8.17□□□□□ -1.1
SCFD1-201ENST00000311943 IGHV3-30P01768 117 aa8.17□□□□□ -1.1
SCFD1-201ENST00000311943 IGHV3-33P01772 117 aa8.17□□□□□ -1.1
SCFD1-201ENST00000311943 IGHV3-30-3P0DP02 117 aa8.17□□□□□ -1.1
SCFD1-201ENST00000311943 IGHV3-30-5P0DP03 117 aa8.17□□□□□ -1.1
SCFD1-201ENST00000311943 TAGLN2P37802 199 aaKnown RBP8.17□□□□□ -1.1
SCFD1-201ENST00000311943 F5H697 171 aa8.16□□□□□ -1.1
SCFD1-201ENST00000311943 GAS8-AS1O95177 125 aa8.16□□□□□ -1.1
SCFD1-201ENST00000311943 MGPP08493 103 aa8.16□□□□□ -1.1
SCFD1-201ENST00000311943 CXCL1P09341 107 aa8.16□□□□□ -1.1
SCFD1-201ENST00000311943 MED14OSP0DP75 135 aa8.16□□□□□ -1.1
SCFD1-201ENST00000311943 ERVFC1-1P60608 527 aa8.16□□□□□ -1.1
SCFD1-201ENST00000311943 SMIM12Q96EX1 92 aa8.16□□□□□ -1.1
SCFD1-201ENST00000311943 PGLYRP4Q96LB8 373 aa8.16□□□□□ -1.1
SCFD1-201ENST00000311943 TRAV26-2A0A0B4J265 109 aa8.15□□□□□ -1.1
SCFD1-201ENST00000311943 RPL23P62829 140 aaKnown RBP8.15□□□□□ -1.1
SCFD1-201ENST00000311943 PIK3CD-AS1Q5SR53 167 aa8.15□□□□□ -1.1
SCFD1-201ENST00000311943 C6orf223Q8N319 242 aa8.15□□□□□ -1.1
SCFD1-201ENST00000311943 NEXN-AS1Q8NBZ9 246 aa8.15□□□□□ -1.1
SCFD1-201ENST00000311943 DYNC1H1Q14204 4646 aaKnown RBP8.15□□□□□ -1.1
SCFD1-201ENST00000311943 GATCO43716 136 aaKnown RBP8.15□□□□□ -1.11
SCFD1-201ENST00000311943 FAM3BP58499 235 aaPredicted RBP8.15□□□□□ -1.11
SCFD1-201ENST00000311943 OR10J3Q5JRS4 329 aa8.14□□□□□ -1.11
SCFD1-201ENST00000311943 TWIST1Q15672 202 aa8.13□□□□□ -1.11
SCFD1-201ENST00000311943 ADIRFQ15847 76 aa8.13□□□□□ -1.11
SCFD1-201ENST00000311943 SUMO4Q6EEV6 95 aa8.13□□□□□ -1.11
SCFD1-201ENST00000311943 Q6ZRN7 208 aaPredicted RBP8.13□□□□□ -1.11
SCFD1-201ENST00000311943 GTSF1LQ9H1H1 148 aa8.13□□□□□ -1.11
SCFD1-201ENST00000311943 V9GYV3 84 aa8.13□□□□□ -1.11
SCFD1-201ENST00000311943 RHODO00212 210 aa8.13□□□□□ -1.11
SCFD1-201ENST00000311943 CTRLP40313 264 aa8.13□□□□□ -1.11
SCFD1-201ENST00000311943 DAZ4Q86SG3 579 aaKnown RBP8.13□□□□□ -1.11
SCFD1-201ENST00000311943 ISOC2Q96AB3 205 aa8.13□□□□□ -1.11
SCFD1-201ENST00000311943 DAZ3Q9NR90 486 aaKnown RBP8.13□□□□□ -1.11
SCFD1-201ENST00000311943 LY96Q9Y6Y9 160 aa8.13□□□□□ -1.11
SCFD1-201ENST00000311943 DNAH5Q8TE73 4624 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 DNAH10OSP0CZ25 163 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 RPS20P60866 119 aaKnown RBP8.12□□□□□ -1.11
SCFD1-201ENST00000311943 TMEM241Q24JQ0 296 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 NTM-AS1Q6ZSK4 140 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 M0QY20 66 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 CIDEAO60543 219 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 RAB4BP61018 213 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 UBE2D3P61077 147 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 UBE2D2P62837 147 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 FAM231DQ6ZW35 169 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 AP1S3Q96PC3 154 aa8.12□□□□□ -1.11
SCFD1-201ENST00000311943 HIGD1CA8MV81 97 aa8.11□□□□□ -1.11
SCFD1-201ENST00000311943 PEA15Q15121 130 aa8.11□□□□□ -1.11
SCFD1-201ENST00000311943 LELP1Q5T871 98 aa8.11□□□□□ -1.11
SCFD1-201ENST00000311943 Q9HAA7 133 aa8.11□□□□□ -1.11
SCFD1-201ENST00000311943 TRBV7-3A0A075B6L6 115 aa8.1□□□□□ -1.11
SCFD1-201ENST00000311943 KRTAP10-2P60368 255 aa8.1□□□□□ -1.11
SCFD1-201ENST00000311943 RPL39LQ96EH5 51 aaKnown RBP8.1□□□□□ -1.11
SCFD1-201ENST00000311943 LRP1BQ9NZR2 4599 aa8.1□□□□□ -1.11
SCFD1-201ENST00000311943 XKRY2A2RUG3 117 aa8.1□□□□□ -1.11
SCFD1-201ENST00000311943 SMIM17P0DL12 118 aa8.1□□□□□ -1.11
SCFD1-201ENST00000311943 BIN3Q9NQY0 253 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms