RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 NOP10Q9NPE3 64 aaKnown RBP13.03□□□□□ -0.32
HMGA1-201ENST00000311487 CELA1Q9UNI1 258 aa13.03□□□□□ -0.32
HMGA1-201ENST00000311487 U3KQK5 164 aa13.03□□□□□ -0.32
HMGA1-201ENST00000311487 MIFP14174 115 aa13.03□□□□□ -0.32
HMGA1-201ENST00000311487 COTL1Q14019 142 aa13.03□□□□□ -0.32
HMGA1-201ENST00000311487 JOSD1Q15040 202 aaPredicted RBP13.03□□□□□ -0.32
HMGA1-201ENST00000311487 TMEM189A5PLL7 270 aa13.02□□□□□ -0.32
HMGA1-201ENST00000311487 ARMS2P0C7Q2 107 aa13.01□□□□□ -0.33
HMGA1-201ENST00000311487 C11orf72Q8NBR9 251 aa13.01□□□□□ -0.33
HMGA1-201ENST00000311487 TMEM263Q8WUH6 116 aaKnown RBP13.01□□□□□ -0.33
HMGA1-201ENST00000311487 IGHV3-16A0A0C4DH30 117 aa13.01□□□□□ -0.33
HMGA1-201ENST00000311487 A0A1B0GUT8 65 aa13.01□□□□□ -0.33
HMGA1-201ENST00000311487 SMIM9A6NGZ8 99 aa13.01□□□□□ -0.33
HMGA1-201ENST00000311487 C18orf32Q8TCD1 76 aa13.01□□□□□ -0.33
HMGA1-201ENST00000311487 ALKBH7Q9BT30 221 aaPredicted RBP13.01□□□□□ -0.33
HMGA1-201ENST00000311487 TPPP3Q9BW30 176 aa13.01□□□□□ -0.33
HMGA1-201ENST00000311487 TDRG1Q3Y452 100 aa13□□□□□ -0.33
HMGA1-201ENST00000311487 FAM222AQ5U5X8 452 aa13□□□□□ -0.33
HMGA1-201ENST00000311487 C16orf74Q96GX8 76 aa13□□□□□ -0.33
HMGA1-201ENST00000311487 H3BVH4 76 aa13□□□□□ -0.33
HMGA1-201ENST00000311487 S100A4P26447 101 aaKnown RBP13□□□□□ -0.33
HMGA1-201ENST00000311487 IQCJQ1A5X6 159 aa13□□□□□ -0.33
HMGA1-201ENST00000311487 LINC01559Q495D7 138 aa13□□□□□ -0.33
HMGA1-201ENST00000311487 KCNS1Q96KK3 526 aa13□□□□□ -0.33
HMGA1-201ENST00000311487 DEFB130BP0DP73 79 aa12.99□□□□□ -0.33
HMGA1-201ENST00000311487 DEFB130AP0DP74 79 aa12.99□□□□□ -0.33
HMGA1-201ENST00000311487 RIGQ13278 110 aa12.99□□□□□ -0.33
HMGA1-201ENST00000311487 GATD1Q8NB37 220 aa12.99□□□□□ -0.33
HMGA1-201ENST00000311487 MRPL16Q9NX20 251 aaKnown RBP12.99□□□□□ -0.33
HMGA1-201ENST00000311487 RNASE3P12724 160 aaKnown RBP12.98□□□□□ -0.33
HMGA1-201ENST00000311487 TRGV11A0A075B6L2 103 aa12.98□□□□□ -0.33
HMGA1-201ENST00000311487 NANOS2P60321 138 aaKnown RBP12.98□□□□□ -0.33
HMGA1-201ENST00000311487 RPS20P60866 119 aaKnown RBP12.98□□□□□ -0.33
HMGA1-201ENST00000311487 LYZL1Q6UWQ5 148 aa12.98□□□□□ -0.33
HMGA1-201ENST00000311487 Q6ZTI0 123 aa12.98□□□□□ -0.33
HMGA1-201ENST00000311487 LINC00467Q9BRT7 94 aa12.98□□□□□ -0.33
HMGA1-201ENST00000311487 TRGV1A0A0A0MS02 117 aa12.97□□□□□ -0.33
HMGA1-201ENST00000311487 A0A1B0GW15 77 aa12.97□□□□□ -0.33
HMGA1-201ENST00000311487 ASIPP42127 132 aa12.97□□□□□ -0.33
HMGA1-201ENST00000311487 NDUFAF3Q9BU61 184 aa12.97□□□□□ -0.33
HMGA1-201ENST00000311487 MUC4Q99102 2169 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 GAGE12BA1L429 117 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 GAGE7O76087 117 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 GAGE12FP0CL80 117 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 GAGE12GP0CL81 117 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 GAGE12IP0CL82 117 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 ZNF415Q09FC8 603 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 BORCS7Q96B45 105 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 SAMD10Q9BYL1 202 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 DKK2Q9UBU2 259 aa12.96□□□□□ -0.33
HMGA1-201ENST00000311487 LINC00614P0C842 121 aa12.96□□□□□ -0.34
HMGA1-201ENST00000311487 IGLC6P0CF74 106 aa12.96□□□□□ -0.34
HMGA1-201ENST00000311487 ZNF493Q6ZR52 646 aa12.96□□□□□ -0.34
HMGA1-201ENST00000311487 CTRLP40313 264 aa12.95□□□□□ -0.34
HMGA1-201ENST00000311487 GAGE1Q13065 139 aa12.95□□□□□ -0.34
HMGA1-201ENST00000311487 FER1L6-AS1Q8NA97 138 aa12.94□□□□□ -0.34
HMGA1-201ENST00000311487 C11orf68Q9H3H3 251 aaKnown RBP12.94□□□□□ -0.34
HMGA1-201ENST00000311487 EDA2RQ9HAV5 297 aa12.94□□□□□ -0.34
HMGA1-201ENST00000311487 C11orf45Q8TAV5 145 aa12.94□□□□□ -0.34
HMGA1-201ENST00000311487 M0R381 172 aa12.93□□□□□ -0.34
HMGA1-201ENST00000311487 SPART-AS1P0CW21 52 aa12.93□□□□□ -0.34
HMGA1-201ENST00000311487 PMCHP20382 165 aa12.93□□□□□ -0.34
HMGA1-201ENST00000311487 DMRTA1Q5VZB9 504 aa12.93□□□□□ -0.34
HMGA1-201ENST00000311487 OR10AG1Q8NH19 301 aa12.93□□□□□ -0.34
HMGA1-201ENST00000311487 IL17DQ8TAD2 202 aa12.93□□□□□ -0.34
HMGA1-201ENST00000311487 IGHV3-53P01767 116 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 AMTP48728 403 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 ZNF876PQ49A33 203 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 C9orf85Q96MD7 179 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 JPT2Q9H910 190 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 HTN3P15516 51 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 C12orf74Q32Q52 190 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 Q6ZTC4 211 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 URB1-AS1Q96HZ7 61 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 PHLDA3Q9Y5J5 127 aa12.92□□□□□ -0.34
HMGA1-201ENST00000311487 DAD1P61803 113 aa12.91□□□□□ -0.34
HMGA1-201ENST00000311487 DAZ2Q13117 558 aaKnown RBP12.91□□□□□ -0.34
HMGA1-201ENST00000311487 FAM19A2Q8N3H0 131 aa12.91□□□□□ -0.34
HMGA1-201ENST00000311487 SVIPQ8NHG7 77 aa12.91□□□□□ -0.34
HMGA1-201ENST00000311487 TRGV2A0A075B6R0 118 aa12.9□□□□□ -0.34
HMGA1-201ENST00000311487 MSRB1Q9NZV6 116 aa12.9□□□□□ -0.34
HMGA1-201ENST00000311487 IGHV3-73A0A0B4J1V6 119 aa12.9□□□□□ -0.35
HMGA1-201ENST00000311487 M0R2P5 195 aa12.9□□□□□ -0.35
HMGA1-201ENST00000311487 SCGB1D1O95968 90 aa12.9□□□□□ -0.35
HMGA1-201ENST00000311487 RNASEKQ6P5S7 137 aaKnown RBP12.9□□□□□ -0.35
HMGA1-201ENST00000311487 NIT1Q86X76 327 aa12.9□□□□□ -0.35
HMGA1-201ENST00000311487 PRO1933Q9H354 126 aa12.9□□□□□ -0.35
HMGA1-201ENST00000311487 CSMD3Q7Z407 3707 aa12.9□□□□□ -0.35
HMGA1-201ENST00000311487 MRPL52Q86TS9 123 aaKnown RBP12.89□□□□□ -0.35
HMGA1-201ENST00000311487 CNFNQ9BYD5 112 aa12.89□□□□□ -0.35
HMGA1-201ENST00000311487 HSBP1O75506 76 aa12.88□□□□□ -0.35
HMGA1-201ENST00000311487 NTF3P20783 257 aa12.88□□□□□ -0.35
HMGA1-201ENST00000311487 LYRM9A8MSI8 78 aa12.88□□□□□ -0.35
HMGA1-201ENST00000311487 DLEU1O43261 78 aa12.88□□□□□ -0.35
HMGA1-201ENST00000311487 G0S2P27469 103 aa12.88□□□□□ -0.35
HMGA1-201ENST00000311487 TWIST1Q15672 202 aa12.88□□□□□ -0.35
HMGA1-201ENST00000311487 SPANXN1Q5VSR9 72 aa12.88□□□□□ -0.35
HMGA1-201ENST00000311487 FAM104BQ5XKR9 115 aa12.88□□□□□ -0.35
HMGA1-201ENST00000311487 SPXQ9BT56 116 aa12.88□□□□□ -0.35
HMGA1-201ENST00000311487 SCRT2Q9NQ03 307 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms