RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 KANTRA0A1W2PQU2 76 aa13.06□□□□□ -0.32
LIME1-201ENST00000309546 LRCOL1A6NCL2 159 aa13.06□□□□□ -0.32
LIME1-201ENST00000309546 SEC11BP0C7V7 166 aa13.06□□□□□ -0.32
LIME1-201ENST00000309546 GCSHP23434 173 aa13.06□□□□□ -0.32
LIME1-201ENST00000309546 XGP55808 180 aa13.06□□□□□ -0.32
LIME1-201ENST00000309546 LINC01559Q495D7 138 aa13.06□□□□□ -0.32
LIME1-201ENST00000309546 EPM2AB3EWF7 344 aa13.05□□□□□ -0.32
LIME1-201ENST00000309546 BCL2L11O43521 198 aa13.05□□□□□ -0.32
LIME1-201ENST00000309546 PFDN1O60925 122 aa13.05□□□□□ -0.32
LIME1-201ENST00000309546 LAGE3Q14657 143 aa13.05□□□□□ -0.32
LIME1-201ENST00000309546 ZFP82Q8N141 532 aa13.05□□□□□ -0.32
LIME1-201ENST00000309546 SCO2A0A1W2PP80 73 aa13.04□□□□□ -0.32
LIME1-201ENST00000309546 UMAD1C9J7I0 102 aa13.04□□□□□ -0.32
LIME1-201ENST00000309546 MBD3L1Q8WWY6 194 aa13.04□□□□□ -0.32
LIME1-201ENST00000309546 SFRP2Q96HF1 295 aa13.04□□□□□ -0.32
LIME1-201ENST00000309546 A0A0D9SG52 128 aa13.03□□□□□ -0.32
LIME1-201ENST00000309546 HMSDA8MTL9 139 aa13.03□□□□□ -0.32
LIME1-201ENST00000309546 Q8N814 137 aa13.03□□□□□ -0.32
LIME1-201ENST00000309546 A0A087WWC5 75 aa13.02□□□□□ -0.33
LIME1-201ENST00000309546 RPL19P84098 196 aaKnown RBP13.02□□□□□ -0.33
LIME1-201ENST00000309546 DAZ4Q86SG3 579 aaKnown RBP13.02□□□□□ -0.33
LIME1-201ENST00000309546 NTN5Q8WTR8 489 aaPredicted RBP13.02□□□□□ -0.33
LIME1-201ENST00000309546 TM2D2Q9BX73 214 aa13.02□□□□□ -0.33
LIME1-201ENST00000309546 DAZ3Q9NR90 486 aaKnown RBP13.02□□□□□ -0.33
LIME1-201ENST00000309546 S100A9P06702 114 aaKnown RBP13.01□□□□□ -0.33
LIME1-201ENST00000309546 H2AFB1P0C5Y9 115 aa13.01□□□□□ -0.33
LIME1-201ENST00000309546 HAMPP81172 84 aa13.01□□□□□ -0.33
LIME1-201ENST00000309546 TRAV8-3A0A0A6YYJ7 113 aa13□□□□□ -0.33
LIME1-201ENST00000309546 EIF5AP63241 154 aaKnown RBP13□□□□□ -0.33
LIME1-201ENST00000309546 URGCP-MRPS24S4R325 110 aa13□□□□□ -0.33
LIME1-201ENST00000309546 TOR2AQ5JU69 321 aa12.99□□□□□ -0.33
LIME1-201ENST00000309546 Q5VSD8 79 aa12.99□□□□□ -0.33
LIME1-201ENST00000309546 PRR27Q6MZM9 219 aa12.99□□□□□ -0.33
LIME1-201ENST00000309546 BAGE2Q86Y30 109 aa12.99□□□□□ -0.33
LIME1-201ENST00000309546 FRZBQ92765 325 aa12.99□□□□□ -0.33
LIME1-201ENST00000309546 WFDC2Q14508 124 aa12.98□□□□□ -0.33
LIME1-201ENST00000309546 TMUB2Q71RG4 321 aa12.98□□□□□ -0.33
LIME1-201ENST00000309546 OR10AG1Q8NH19 301 aa12.98□□□□□ -0.33
LIME1-201ENST00000309546 LECT2O14960 151 aa12.97□□□□□ -0.33
LIME1-201ENST00000309546 SMR3BP02814 79 aaPredicted RBP12.97□□□□□ -0.33
LIME1-201ENST00000309546 RPL36AP83881 106 aaKnown RBP12.97□□□□□ -0.33
LIME1-201ENST00000309546 ZNF56Q15929 161 aa12.97□□□□□ -0.33
LIME1-201ENST00000309546 RPL36ALQ969Q0 106 aaKnown RBP12.97□□□□□ -0.33
LIME1-201ENST00000309546 MUC21A0A0G2JKD1 596 aa12.96□□□□□ -0.33
LIME1-201ENST00000309546 TRBV10-1A0A0K0K1A3 114 aa12.96□□□□□ -0.33
LIME1-201ENST00000309546 MUC21A0A140T8X8 626 aa12.96□□□□□ -0.33
LIME1-201ENST00000309546 NIT1Q86X76 327 aa12.96□□□□□ -0.33
LIME1-201ENST00000309546 MLST8Q9BVC4 326 aa12.96□□□□□ -0.33
LIME1-201ENST00000309546 GNG13Q9P2W3 67 aa12.96□□□□□ -0.33
LIME1-201ENST00000309546 CXCL1P09341 107 aa12.95□□□□□ -0.34
LIME1-201ENST00000309546 SSTP61278 116 aa12.95□□□□□ -0.34
LIME1-201ENST00000309546 TMEM70Q9BUB7 260 aa12.95□□□□□ -0.34
LIME1-201ENST00000309546 KLK12Q9UKR0 248 aa12.95□□□□□ -0.34
LIME1-201ENST00000309546 TRBV7-3A0A075B6L6 115 aa12.94□□□□□ -0.34
LIME1-201ENST00000309546 INAFM2P0DMQ5 153 aa12.94□□□□□ -0.34
LIME1-201ENST00000309546 RPL35P42766 123 aaKnown RBP12.94□□□□□ -0.34
LIME1-201ENST00000309546 UBE2D3P61077 147 aa12.94□□□□□ -0.34
LIME1-201ENST00000309546 UBE2D2P62837 147 aa12.94□□□□□ -0.34
LIME1-201ENST00000309546 SPANXN1Q5VSR9 72 aa12.94□□□□□ -0.34
LIME1-201ENST00000309546 KCNIP4Q6PIL6 250 aa12.94□□□□□ -0.34
LIME1-201ENST00000309546 MANBALQ9NQG1 85 aa12.94□□□□□ -0.34
LIME1-201ENST00000309546 FAT1Q14517 4588 aa12.94□□□□□ -0.34
LIME1-201ENST00000309546 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.93□□□□□ -0.34
LIME1-201ENST00000309546 IGKV2D-24A0A075B6R9 120 aa12.93□□□□□ -0.34
LIME1-201ENST00000309546 A0A087WX48 190 aa12.93□□□□□ -0.34
LIME1-201ENST00000309546 RAB4BP61018 213 aa12.93□□□□□ -0.34
LIME1-201ENST00000309546 CCL20P78556 96 aa12.93□□□□□ -0.34
LIME1-201ENST00000309546 BAALCQ8WXS3 180 aa12.93□□□□□ -0.34
LIME1-201ENST00000309546 RMI2Q96E14 147 aa12.93□□□□□ -0.34
LIME1-201ENST00000309546 DNAJC30Q96LL9 226 aa12.93□□□□□ -0.34
LIME1-201ENST00000309546 DERL1Q9BUN8 251 aa12.93□□□□□ -0.34
LIME1-201ENST00000309546 SNAI2O43623 268 aa12.92□□□□□ -0.34
LIME1-201ENST00000309546 NEXN-AS1Q8NBZ9 246 aa12.92□□□□□ -0.34
LIME1-201ENST00000309546 UBE2WQ96B02 151 aa12.92□□□□□ -0.34
LIME1-201ENST00000309546 VPS13BQ7Z7G8 4022 aa12.92□□□□□ -0.34
LIME1-201ENST00000309546 F5H697 171 aa12.91□□□□□ -0.34
LIME1-201ENST00000309546 OR5AL1P0C617 328 aa12.91□□□□□ -0.34
LIME1-201ENST00000309546 OR10G8Q8NGN5 311 aa12.91□□□□□ -0.34
LIME1-201ENST00000309546 COX11Q9Y6N1 276 aa12.91□□□□□ -0.34
LIME1-201ENST00000309546 CENPWQ5EE01 88 aa12.9□□□□□ -0.34
LIME1-201ENST00000309546 C11orf52Q96A22 123 aa12.9□□□□□ -0.34
LIME1-201ENST00000309546 CHCHD7Q9BUK0 85 aa12.9□□□□□ -0.34
LIME1-201ENST00000309546 SSBP4Q9BWG4 385 aaPredicted RBP12.9□□□□□ -0.34
LIME1-201ENST00000309546 FAM30AQ9NZY2 134 aa12.9□□□□□ -0.34
LIME1-201ENST00000309546 TMEM262E9PQX1 116 aa12.89□□□□□ -0.35
LIME1-201ENST00000309546 SMIM17P0DL12 118 aa12.89□□□□□ -0.35
LIME1-201ENST00000309546 ELOBQ15370 118 aa12.89□□□□□ -0.35
LIME1-201ENST00000309546 EIF5AL1Q6IS14 154 aaKnown RBP12.89□□□□□ -0.35
LIME1-201ENST00000309546 TPPP3Q9BW30 176 aa12.89□□□□□ -0.35
LIME1-201ENST00000309546 DNAH8Q96JB1 4490 aa12.89□□□□□ -0.35
LIME1-201ENST00000309546 TRBV6-8A0A0A6YYG3 113 aa12.88□□□□□ -0.35
LIME1-201ENST00000309546 FAM229AH3BQW9 127 aa12.88□□□□□ -0.35
LIME1-201ENST00000309546 TEX46H3BTG2 121 aa12.88□□□□□ -0.35
LIME1-201ENST00000309546 RAB5CP51148 216 aa12.88□□□□□ -0.35
LIME1-201ENST00000309546 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.88□□□□□ -0.35
LIME1-201ENST00000309546 AP1S3Q96PC3 154 aa12.88□□□□□ -0.35
LIME1-201ENST00000309546 TRAV1-1A0A0B4J248 108 aa12.87□□□□□ -0.35
LIME1-201ENST00000309546 GZMBP10144 247 aa12.87□□□□□ -0.35
LIME1-201ENST00000309546 Q6ZNX1 250 aa12.87□□□□□ -0.35
LIME1-201ENST00000309546 DAZAP1Q96EP5 407 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms